miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 71596 0.66 0.999856
Target:  5'- -cACCGugggucccggcgcGGUGUUAGAcaugGGGCAgGCCGUg -3'
miRNA:   3'- uuUGGC-------------UCACGAUUU----UUCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194779 0.66 0.999819
Target:  5'- cGGACUGgcggaacgacaAGUGCUGugGAGC-CACaCGCa -3'
miRNA:   3'- -UUUGGC-----------UCACGAUuuUUCGuGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 234717 0.66 0.999819
Target:  5'- cGGACUGgcggaacgacaAGUGCUGugGAGC-CACaCGCa -3'
miRNA:   3'- -UUUGGC-----------UCACGAUuuUUCGuGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 39585 0.66 0.999819
Target:  5'- cGACCGAGggGC-GGGGGGCGCggcgacauGCCGUu -3'
miRNA:   3'- uUUGGCUCa-CGaUUUUUCGUG--------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 178663 0.66 0.999819
Target:  5'- cGGCgGuGgcgGC-AAGAAGCACgACCGCg -3'
miRNA:   3'- uUUGgCuCa--CGaUUUUUCGUG-UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 65971 0.66 0.999819
Target:  5'- --cUCGAc-GCUGGAucGCGCACUGCu -3'
miRNA:   3'- uuuGGCUcaCGAUUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 234478 0.66 0.999819
Target:  5'- cGACCGAGggGC-GGGGGGCGCggcgacauGCCGUu -3'
miRNA:   3'- uUUGGCUCa-CGaUUUUUCGUG--------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 100844 0.66 0.999819
Target:  5'- ---aCGuGUGC-GAAGAGCAC-CUGCa -3'
miRNA:   3'- uuugGCuCACGaUUUUUCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 90703 0.66 0.999819
Target:  5'- -cACCGAcUGCUGAcugucguGCACaaacuGCCGCa -3'
miRNA:   3'- uuUGGCUcACGAUUuuu----CGUG-----UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 232806 0.66 0.999815
Target:  5'- uGACCGgauguuuGGUgGCUAGGguGAGCACcucagccucGCCGCg -3'
miRNA:   3'- uUUGGC-------UCA-CGAUUU--UUCGUG---------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 26032 0.66 0.999769
Target:  5'- -uGCUGAugGUGCUGAGAAucaugacccuGCGCACCu- -3'
miRNA:   3'- uuUGGCU--CACGAUUUUU----------CGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 82609 0.66 0.999769
Target:  5'- cAAACgGGcGUGCUGGGc-GCGCuCCGCg -3'
miRNA:   3'- -UUUGgCU-CACGAUUUuuCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 117399 0.66 0.999769
Target:  5'- --uCUGAGUGCUGc--GGUuccCGCCGCu -3'
miRNA:   3'- uuuGGCUCACGAUuuuUCGu--GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 113133 0.66 0.999769
Target:  5'- aAGGCgGcGgccGC-AGAGGGCGCGCCGCu -3'
miRNA:   3'- -UUUGgCuCa--CGaUUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 69236 0.66 0.999769
Target:  5'- gAGACCGAccccGcGCUGAucauGCGCgACCGCc -3'
miRNA:   3'- -UUUGGCU----CaCGAUUuuu-CGUG-UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 96023 0.66 0.999757
Target:  5'- uGGCCGAGcgGCgccaucuuggagGAGGGGCgagucgcggGCACCGCc -3'
miRNA:   3'- uUUGGCUCa-CGa-----------UUUUUCG---------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 233507 0.67 0.999706
Target:  5'- gGAAUCGuGUGCgcGAAAGCcuguuCGCgGCa -3'
miRNA:   3'- -UUUGGCuCACGauUUUUCGu----GUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 57481 0.67 0.999706
Target:  5'- -cGCCGuGGUGCUGGGucAGUGCcagcgggaaACCGCg -3'
miRNA:   3'- uuUGGC-UCACGAUUUu-UCGUG---------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 43128 0.67 0.999706
Target:  5'- cAGACCGuacgGGUGU-----GGUAUACCGCg -3'
miRNA:   3'- -UUUGGC----UCACGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194500 0.67 0.999706
Target:  5'- -cGCCGguucaGGgaagGCUAGAGaaacaggugucgGGCACGCCGUc -3'
miRNA:   3'- uuUGGC-----UCa---CGAUUUU------------UCGUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.