miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 121633 0.67 0.999706
Target:  5'- -uGCUGAGcUGCau--GAGCACggcGCCGCc -3'
miRNA:   3'- uuUGGCUC-ACGauuuUUCGUG---UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 57481 0.67 0.999706
Target:  5'- -cGCCGuGGUGCUGGGucAGUGCcagcgggaaACCGCg -3'
miRNA:   3'- uuUGGC-UCACGAUUUu-UCGUG---------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 43128 0.67 0.999706
Target:  5'- cAGACCGuacgGGUGU-----GGUAUACCGCg -3'
miRNA:   3'- -UUUGGC----UCACGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 14109 0.67 0.999706
Target:  5'- cGGACCGccgGCUGuuucuGCGCACCGg -3'
miRNA:   3'- -UUUGGCucaCGAUuuuu-CGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 2415 0.67 0.999699
Target:  5'- -cGCCGAGgccgcgcggcggcUGCUGcccGAGCugGaCCGCg -3'
miRNA:   3'- uuUGGCUC-------------ACGAUuu-UUCGugU-GGCG- -5'
29723 3' -48.3 NC_006273.1 + 197308 0.67 0.999699
Target:  5'- -cGCCGAGgccgcgcggcggcUGCUGcccGAGCugGaCCGCg -3'
miRNA:   3'- uuUGGCUC-------------ACGAUuu-UUCGugU-GGCG- -5'
29723 3' -48.3 NC_006273.1 + 106972 0.67 0.99963
Target:  5'- cAGGCCGGG-GCgcac-AGCuuaACGCCGCu -3'
miRNA:   3'- -UUUGGCUCaCGauuuuUCG---UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 73173 0.67 0.99963
Target:  5'- -cGCCGcuuccuccgGCUGc--AGCGCACCGCg -3'
miRNA:   3'- uuUGGCuca------CGAUuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 58934 0.67 0.99963
Target:  5'- -cACCGAGgcacgGCccuuGAGCGCGCacaGCa -3'
miRNA:   3'- uuUGGCUCa----CGauuuUUCGUGUGg--CG- -5'
29723 3' -48.3 NC_006273.1 + 137474 0.67 0.99963
Target:  5'- -uACUGGGUGCUGccGGGCGgcuuUGCCGUc -3'
miRNA:   3'- uuUGGCUCACGAUuuUUCGU----GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 120491 0.67 0.999576
Target:  5'- gAAACCG-GUGCcGGccgcgcuagcgggcuGcAGUACACCGCg -3'
miRNA:   3'- -UUUGGCuCACGaUU---------------UuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 189906 0.67 0.999536
Target:  5'- aAAACC-AGcugGUUGAAGAGCGCGCacaCGCg -3'
miRNA:   3'- -UUUGGcUCa--CGAUUUUUCGUGUG---GCG- -5'
29723 3' -48.3 NC_006273.1 + 160734 0.67 0.999536
Target:  5'- uGAACgCGGGUc---AGAAGUACGCCGCc -3'
miRNA:   3'- -UUUG-GCUCAcgauUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 105453 0.67 0.999536
Target:  5'- -cACCGucGGcGCUAcaAGGAGUcgGCGCCGCa -3'
miRNA:   3'- uuUGGC--UCaCGAU--UUUUCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 55941 0.67 0.999536
Target:  5'- cAACCGuuuGgccaGCUGAGAcgcAGCACcguGCCGCu -3'
miRNA:   3'- uUUGGCu--Ca---CGAUUUU---UCGUG---UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 44771 0.67 0.999536
Target:  5'- ---aCGAGUGUUAcuAGGagauCGCCGCg -3'
miRNA:   3'- uuugGCUCACGAUuuUUCgu--GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 158353 0.67 0.999493
Target:  5'- aAGGCCGAGcgucguucgcgcgGCgugc--GCACGCCGCu -3'
miRNA:   3'- -UUUGGCUCa------------CGauuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 89541 0.67 0.999422
Target:  5'- gGAGCCuuGUccucGCgAAAcgucGAGCGCACCGCg -3'
miRNA:   3'- -UUUGGcuCA----CGaUUU----UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 42473 0.67 0.999422
Target:  5'- -cACCGAGUGCcGAcucu--CACCGCa -3'
miRNA:   3'- uuUGGCUCACGaUUuuucguGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 90745 0.67 0.999422
Target:  5'- cGACCGcugcccUGCUu--GAGCACGCCGa -3'
miRNA:   3'- uUUGGCuc----ACGAuuuUUCGUGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.