miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 89541 0.67 0.999422
Target:  5'- gGAGCCuuGUccucGCgAAAcgucGAGCGCACCGCg -3'
miRNA:   3'- -UUUGGcuCA----CGaUUU----UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 42473 0.67 0.999422
Target:  5'- -cACCGAGUGCcGAcucu--CACCGCa -3'
miRNA:   3'- uuUGGCUCACGaUUuuucguGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 185414 0.67 0.999422
Target:  5'- cGGCCGAcGUGgUGGAcca-GCACCGCg -3'
miRNA:   3'- uUUGGCU-CACgAUUUuucgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 197160 0.67 0.999422
Target:  5'- -uGCUGgugguGGUGCUGGAcGAGCuggGCGCCGUg -3'
miRNA:   3'- uuUGGC-----UCACGAUUU-UUCG---UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 64693 0.67 0.999329
Target:  5'- cAGACCGAGgcGCUGgacgccaucauggaaGAGGGCGCGCgucuggaCGCg -3'
miRNA:   3'- -UUUGGCUCa-CGAU---------------UUUUCGUGUG-------GCG- -5'
29723 3' -48.3 NC_006273.1 + 73753 0.67 0.999285
Target:  5'- cGGCCGAG-GCccGGcAGCGgCGCCGCc -3'
miRNA:   3'- uUUGGCUCaCGauUUuUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 229752 0.67 0.999285
Target:  5'- uAACCGGG-GuCUGcgGGGCACgcccccACCGCg -3'
miRNA:   3'- uUUGGCUCaC-GAUuuUUCGUG------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 92216 0.67 0.999285
Target:  5'- cGGugCGAGcaGUUGGGGaugcGGCGCGCCGUg -3'
miRNA:   3'- -UUugGCUCa-CGAUUUU----UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 26472 0.67 0.999285
Target:  5'- -cACCG-GUGUUGGuucuGGGCGCGCUGg -3'
miRNA:   3'- uuUGGCuCACGAUUu---UUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 115458 0.67 0.999285
Target:  5'- uGGACCGcGUGCccguuAGCGgACUGCa -3'
miRNA:   3'- -UUUGGCuCACGauuuuUCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 52535 0.67 0.999285
Target:  5'- gGGGCCGuuGUGCUGcagcagccGAGCucguCGCCGCc -3'
miRNA:   3'- -UUUGGCu-CACGAUuu------UUCGu---GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 94252 0.67 0.999285
Target:  5'- --uCCGGccGUGCUGcgGuccGCACGCUGCg -3'
miRNA:   3'- uuuGGCU--CACGAUuuUu--CGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 185274 0.68 0.999121
Target:  5'- cGACCGcagcGGUgGCUgGAGAAGCGCAgCGUc -3'
miRNA:   3'- uUUGGC----UCA-CGA-UUUUUCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 112094 0.68 0.999121
Target:  5'- -cAUCGAGUGgaAGGcGGCAUcucgggGCCGCg -3'
miRNA:   3'- uuUGGCUCACgaUUUuUCGUG------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 233469 0.68 0.998926
Target:  5'- aAAACCaGGUGCUGAcgccagacAGAG-ACGCCGUc -3'
miRNA:   3'- -UUUGGcUCACGAUU--------UUUCgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 23079 0.68 0.998926
Target:  5'- cGAACCGucccuGUGaCUAAAcuGUACACCaGCc -3'
miRNA:   3'- -UUUGGCu----CAC-GAUUUuuCGUGUGG-CG- -5'
29723 3' -48.3 NC_006273.1 + 51918 0.68 0.998695
Target:  5'- uGugCGcGUGCUGAcggacgugGGAGCGCACCu- -3'
miRNA:   3'- uUugGCuCACGAUU--------UUUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 221489 0.68 0.998591
Target:  5'- cAGCCGGGUGCccgaccgUGAAGAGCccucauccaccugaACagACCGCu -3'
miRNA:   3'- uUUGGCUCACG-------AUUUUUCG--------------UG--UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 119395 0.68 0.998423
Target:  5'- cGGCCGuGUucgaUGAAAcGCGCGCCGCc -3'
miRNA:   3'- uUUGGCuCAcg--AUUUUuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 79825 0.68 0.998423
Target:  5'- gGAGCCGAc-GCUGAAAcGCcgACGCUGCu -3'
miRNA:   3'- -UUUGGCUcaCGAUUUUuCG--UGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.