miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 183537 0.68 0.998423
Target:  5'- aAAGCa-GGUGCU-GGAAGCGCGUCGCg -3'
miRNA:   3'- -UUUGgcUCACGAuUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 119395 0.68 0.998423
Target:  5'- cGGCCGuGUucgaUGAAAcGCGCGCCGCc -3'
miRNA:   3'- uUUGGCuCAcg--AUUUUuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 71954 0.68 0.998423
Target:  5'- cAugCGAcUGCUGGGGGGCcaACGCCGg -3'
miRNA:   3'- uUugGCUcACGAUUUUUCG--UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 183752 0.68 0.998423
Target:  5'- ---aCGGGUGCUGuc---CGCGCCGCc -3'
miRNA:   3'- uuugGCUCACGAUuuuucGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 79825 0.68 0.998423
Target:  5'- gGAGCCGAc-GCUGAAAcGCcgACGCUGCu -3'
miRNA:   3'- -UUUGGCUcaCGAUUUUuCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 193449 0.68 0.998423
Target:  5'- gAAACCGGGaaCUAGcggcAAGgGCGCCGCu -3'
miRNA:   3'- -UUUGGCUCacGAUUu---UUCgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 107391 0.68 0.998423
Target:  5'- gGAACCcaugggcGGUGC-----GGCGCGCCGCa -3'
miRNA:   3'- -UUUGGc------UCACGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 177244 0.68 0.998104
Target:  5'- -cACCGuGGUGCg--GAGGC-CGCUGCg -3'
miRNA:   3'- uuUGGC-UCACGauuUUUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 234611 0.68 0.998104
Target:  5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3'
miRNA:   3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194673 0.68 0.998104
Target:  5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3'
miRNA:   3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 211655 0.68 0.998104
Target:  5'- cAGCUGcAGagGCUAAAAAGCACGCaaGCc -3'
miRNA:   3'- uUUGGC-UCa-CGAUUUUUCGUGUGg-CG- -5'
29723 3' -48.3 NC_006273.1 + 154936 0.68 0.998104
Target:  5'- cGACCGAGgagaUGUUGcguGAGCugGCgCGCg -3'
miRNA:   3'- uUUGGCUC----ACGAUuu-UUCGugUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 61575 0.69 0.997888
Target:  5'- cGGCCGGGUcGCgcggccguuuGGC-CACCGCg -3'
miRNA:   3'- uUUGGCUCA-CGauuuu-----UCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 114559 0.69 0.997733
Target:  5'- aAGGCCGAGUccaccgucGCgcccGAAGAGgACACCGa -3'
miRNA:   3'- -UUUGGCUCA--------CGa---UUUUUCgUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 98027 0.69 0.997733
Target:  5'- aAAGCCcGGUGCgAGGAcaaCGCGCCGCg -3'
miRNA:   3'- -UUUGGcUCACGaUUUUuc-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 99787 0.69 0.997733
Target:  5'- cGGCCGGcGUGCguauGAGGUagcuguacACGCCGCu -3'
miRNA:   3'- uUUGGCU-CACGauu-UUUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 101274 0.69 0.997303
Target:  5'- -cGCCGAGUGCgc---GGCGCACa-- -3'
miRNA:   3'- uuUGGCUCACGauuuuUCGUGUGgcg -5'
29723 3' -48.3 NC_006273.1 + 90821 0.69 0.997303
Target:  5'- cAGACCGAG-GCc--GucGCGCACCGg -3'
miRNA:   3'- -UUUGGCUCaCGauuUuuCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 195914 0.69 0.997303
Target:  5'- uGGugCGAGUGCUGcgccuacGGCgACGCCGg -3'
miRNA:   3'- -UUugGCUCACGAUuuu----UCG-UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 122781 0.69 0.997303
Target:  5'- --cCCGGGcaacgGCUGcucGGCGCACUGCg -3'
miRNA:   3'- uuuGGCUCa----CGAUuuuUCGUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.