miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 1021 0.69 0.997303
Target:  5'- uGGugCGAGUGCUGcgccuacGGCgACGCCGg -3'
miRNA:   3'- -UUugGCUCACGAUuuu----UCG-UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 1796 0.71 0.990843
Target:  5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3'
miRNA:   3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 2267 0.67 0.999422
Target:  5'- -uGCUGgugguGGUGCUGGAcGAGCuggGCGCCGUg -3'
miRNA:   3'- uuUGGC-----UCACGAUUU-UUCG---UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 2415 0.67 0.999699
Target:  5'- -cGCCGAGgccgcgcggcggcUGCUGcccGAGCugGaCCGCg -3'
miRNA:   3'- uuUGGCUC-------------ACGAUuu-UUCGugU-GGCG- -5'
29723 3' -48.3 NC_006273.1 + 13598 0.71 0.988078
Target:  5'- cGGGCCGccGUGCUGGAGGGC-CGCCcCa -3'
miRNA:   3'- -UUUGGCu-CACGAUUUUUCGuGUGGcG- -5'
29723 3' -48.3 NC_006273.1 + 14109 0.67 0.999706
Target:  5'- cGGACCGccgGCUGuuucuGCGCACCGg -3'
miRNA:   3'- -UUUGGCucaCGAUuuuu-CGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 15087 0.71 0.990843
Target:  5'- uGGGCUGuccGUGCUAAucuGGcCACGCCGUg -3'
miRNA:   3'- -UUUGGCu--CACGAUUuu-UC-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 16610 0.72 0.973143
Target:  5'- uGGCCGAGUGCgAAAuguacGuCACGCUGCa -3'
miRNA:   3'- uUUGGCUCACGaUUUuu---C-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 20591 0.66 0.999917
Target:  5'- --cUCGAGUGgUucAAAAAGUuCACCGUa -3'
miRNA:   3'- uuuGGCUCACgA--UUUUUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 21316 0.66 0.999892
Target:  5'- cAGCCG-GUGCgcGAccGCA-ACCGCg -3'
miRNA:   3'- uUUGGCuCACGauUUuuCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 22140 0.75 0.928003
Target:  5'- uAACCGGGUGCUGAuAAGaCGgACUGUu -3'
miRNA:   3'- uUUGGCUCACGAUUuUUC-GUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 23079 0.68 0.998926
Target:  5'- cGAACCGucccuGUGaCUAAAcuGUACACCaGCc -3'
miRNA:   3'- -UUUGGCu----CAC-GAUUUuuCGUGUGG-CG- -5'
29723 3' -48.3 NC_006273.1 + 24415 0.69 0.996808
Target:  5'- cGGCCGugguggccGUGCUGGGcuGGGUGCAUCGCu -3'
miRNA:   3'- uUUGGCu-------CACGAUUU--UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 26032 0.66 0.999769
Target:  5'- -uGCUGAugGUGCUGAGAAucaugacccuGCGCACCu- -3'
miRNA:   3'- uuUGGCU--CACGAUUUUU----------CGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 26472 0.67 0.999285
Target:  5'- -cACCG-GUGUUGGuucuGGGCGCGCUGg -3'
miRNA:   3'- uuUGGCuCACGAUUu---UUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 29179 0.69 0.996239
Target:  5'- -uACCGAGUagaGUauuccGAGGCGCGCUGCg -3'
miRNA:   3'- uuUGGCUCA---CGauu--UUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 29681 0.71 0.988078
Target:  5'- cAAACCGAG-GCUcc-AGGCGCGCaacaGCg -3'
miRNA:   3'- -UUUGGCUCaCGAuuuUUCGUGUGg---CG- -5'
29723 3' -48.3 NC_006273.1 + 33393 0.71 0.986472
Target:  5'- -uGCCaGAGUaggcGCUGGAc-GCGCACCGCc -3'
miRNA:   3'- uuUGG-CUCA----CGAUUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 36551 0.74 0.943286
Target:  5'- gAGGCCGAGaGCcccAGAucGCGCGCCGUg -3'
miRNA:   3'- -UUUGGCUCaCGa--UUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 36752 0.69 0.99545
Target:  5'- cAGACCGGGcuccgGCggguggccuGAGCACGCCGa -3'
miRNA:   3'- -UUUGGCUCa----CGauuu-----UUCGUGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.