miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 37411 0.75 0.916523
Target:  5'- cGACUGAGcGCc--GGGGCGCGCCGCu -3'
miRNA:   3'- uUUGGCUCaCGauuUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 39585 0.66 0.999819
Target:  5'- cGACCGAGggGC-GGGGGGCGCggcgacauGCCGUu -3'
miRNA:   3'- uUUGGCUCa-CGaUUUUUCGUG--------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 41440 0.66 0.999892
Target:  5'- uGACCGGG-GUUu--GGGUAC-CCGCg -3'
miRNA:   3'- uUUGGCUCaCGAuuuUUCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 42473 0.67 0.999422
Target:  5'- -cACCGAGUGCcGAcucu--CACCGCa -3'
miRNA:   3'- uuUGGCUCACGaUUuuucguGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 43128 0.67 0.999706
Target:  5'- cAGACCGuacgGGUGU-----GGUAUACCGCg -3'
miRNA:   3'- -UUUGGC----UCACGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 44771 0.67 0.999536
Target:  5'- ---aCGAGUGUUAcuAGGagauCGCCGCg -3'
miRNA:   3'- uuugGCUCACGAUuuUUCgu--GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 46314 0.66 0.999892
Target:  5'- --cCCGGGcGC-AAGAAGCggccgccuACGCCGCc -3'
miRNA:   3'- uuuGGCUCaCGaUUUUUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 50224 0.72 0.973143
Target:  5'- --uCUGGGUGCUGuuGAGCuGC-CCGCg -3'
miRNA:   3'- uuuGGCUCACGAUuuUUCG-UGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 51918 0.68 0.998695
Target:  5'- uGugCGcGUGCUGAcggacgugGGAGCGCACCu- -3'
miRNA:   3'- uUugGCuCACGAUU--------UUUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 52535 0.67 0.999285
Target:  5'- gGGGCCGuuGUGCUGcagcagccGAGCucguCGCCGCc -3'
miRNA:   3'- -UUUGGCu-CACGAUuu------UUCGu---GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 52590 0.66 0.999917
Target:  5'- gGGACCGuGUGCggucucuuGGGCuCGCUGUa -3'
miRNA:   3'- -UUUGGCuCACGauuu----UUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 55454 0.67 0.999422
Target:  5'- uGAGUCGGGcGgUGGccGGCACGCCGCa -3'
miRNA:   3'- -UUUGGCUCaCgAUUuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 55941 0.67 0.999536
Target:  5'- cAACCGuuuGgccaGCUGAGAcgcAGCACcguGCCGCu -3'
miRNA:   3'- uUUGGCu--Ca---CGAUUUU---UCGUG---UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 57481 0.67 0.999706
Target:  5'- -cGCCGuGGUGCUGGGucAGUGCcagcgggaaACCGCg -3'
miRNA:   3'- uuUGGC-UCACGAUUUu-UCGUG---------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 58467 0.69 0.996808
Target:  5'- cAAAUCGAc-GCUAGc--GCGCACCGCg -3'
miRNA:   3'- -UUUGGCUcaCGAUUuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 58934 0.67 0.99963
Target:  5'- -cACCGAGgcacgGCccuuGAGCGCGCacaGCa -3'
miRNA:   3'- uuUGGCUCa----CGauuuUUCGUGUGg--CG- -5'
29723 3' -48.3 NC_006273.1 + 61575 0.69 0.997888
Target:  5'- cGGCCGGGUcGCgcggccguuuGGC-CACCGCg -3'
miRNA:   3'- uUUGGCUCA-CGauuuu-----UCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 62682 0.69 0.996754
Target:  5'- cGAUCGcGUGCUGGAAGaccacuuGCauACGCCGCg -3'
miRNA:   3'- uUUGGCuCACGAUUUUU-------CG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 63823 0.66 0.99986
Target:  5'- -cACCGGcaGC-----GGCACGCCGCg -3'
miRNA:   3'- uuUGGCUcaCGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 64693 0.67 0.999329
Target:  5'- cAGACCGAGgcGCUGgacgccaucauggaaGAGGGCGCGCgucuggaCGCg -3'
miRNA:   3'- -UUUGGCUCa-CGAU---------------UUUUCGUGUG-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.