miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 65971 0.66 0.999819
Target:  5'- --cUCGAc-GCUGGAucGCGCACUGCu -3'
miRNA:   3'- uuuGGCUcaCGAUUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 68116 0.69 0.99559
Target:  5'- uGACCGAGacuagcgagcgGCUAGAucGCuCGCUGCg -3'
miRNA:   3'- uUUGGCUCa----------CGAUUUuuCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 68316 0.66 0.999917
Target:  5'- gAGGCCGAucUGCUGAAucagaAAGUACAgaCGCa -3'
miRNA:   3'- -UUUGGCUc-ACGAUUU-----UUCGUGUg-GCG- -5'
29723 3' -48.3 NC_006273.1 + 69236 0.66 0.999769
Target:  5'- gAGACCGAccccGcGCUGAucauGCGCgACCGCc -3'
miRNA:   3'- -UUUGGCU----CaCGAUUuuu-CGUG-UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 71596 0.66 0.999856
Target:  5'- -cACCGugggucccggcgcGGUGUUAGAcaugGGGCAgGCCGUg -3'
miRNA:   3'- uuUGGC-------------UCACGAUUU----UUCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 71954 0.68 0.998423
Target:  5'- cAugCGAcUGCUGGGGGGCcaACGCCGg -3'
miRNA:   3'- uUugGCUcACGAUUUUUCG--UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 73173 0.67 0.99963
Target:  5'- -cGCCGcuuccuccgGCUGc--AGCGCACCGCg -3'
miRNA:   3'- uuUGGCuca------CGAUuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 73753 0.67 0.999285
Target:  5'- cGGCCGAG-GCccGGcAGCGgCGCCGCc -3'
miRNA:   3'- uUUGGCUCaCGauUUuUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 75211 0.71 0.988078
Target:  5'- cAACUGAGcUGCUAu--GGCACGcgcacCCGCg -3'
miRNA:   3'- uUUGGCUC-ACGAUuuuUCGUGU-----GGCG- -5'
29723 3' -48.3 NC_006273.1 + 78681 0.66 0.999892
Target:  5'- gGGGCCGGGguccGCg----GGCAcCGCCGCc -3'
miRNA:   3'- -UUUGGCUCa---CGauuuuUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 79825 0.68 0.998423
Target:  5'- gGAGCCGAc-GCUGAAAcGCcgACGCUGCu -3'
miRNA:   3'- -UUUGGCUcaCGAUUUUuCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 79869 0.66 0.999883
Target:  5'- gGAGCCGGGUGaaacgccguccugaCUGGAcGGCGCAgaUUGCa -3'
miRNA:   3'- -UUUGGCUCAC--------------GAUUUuUCGUGU--GGCG- -5'
29723 3' -48.3 NC_006273.1 + 80761 0.66 0.999917
Target:  5'- --cCCGAGUGCccAAAGAuCACACCc- -3'
miRNA:   3'- uuuGGCUCACGa-UUUUUcGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 82609 0.66 0.999769
Target:  5'- cAAACgGGcGUGCUGGGc-GCGCuCCGCg -3'
miRNA:   3'- -UUUGgCU-CACGAUUUuuCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 89541 0.67 0.999422
Target:  5'- gGAGCCuuGUccucGCgAAAcgucGAGCGCACCGCg -3'
miRNA:   3'- -UUUGGcuCA----CGaUUU----UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 90703 0.66 0.999819
Target:  5'- -cACCGAcUGCUGAcugucguGCACaaacuGCCGCa -3'
miRNA:   3'- uuUGGCUcACGAUUuuu----CGUG-----UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 90745 0.67 0.999422
Target:  5'- cGACCGcugcccUGCUu--GAGCACGCCGa -3'
miRNA:   3'- uUUGGCuc----ACGAuuuUUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 90821 0.69 0.997303
Target:  5'- cAGACCGAG-GCc--GucGCGCACCGg -3'
miRNA:   3'- -UUUGGCUCaCGauuUuuCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 91989 0.7 0.993077
Target:  5'- -cGCCGGcGUGCuUAAAGAGCaACGCCu- -3'
miRNA:   3'- uuUGGCU-CACG-AUUUUUCG-UGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 92216 0.67 0.999285
Target:  5'- cGGugCGAGcaGUUGGGGaugcGGCGCGCCGUg -3'
miRNA:   3'- -UUugGCUCa-CGAUUUU----UCGUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.