miRNA display CGI


Results 61 - 80 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 92301 0.69 0.99559
Target:  5'- -cGCUGAG-GCUGuAAucGCACAgCGCg -3'
miRNA:   3'- uuUGGCUCaCGAU-UUuuCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 94153 0.8 0.731214
Target:  5'- uGAGCCG-GUGCUGcgguccguAGGUACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUuu------UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 94252 0.67 0.999285
Target:  5'- --uCCGGccGUGCUGcgGuccGCACGCUGCg -3'
miRNA:   3'- uuuGGCU--CACGAUuuUu--CGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 96023 0.66 0.999757
Target:  5'- uGGCCGAGcgGCgccaucuuggagGAGGGGCgagucgcggGCACCGCc -3'
miRNA:   3'- uUUGGCUCa-CGa-----------UUUUUCG---------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 98027 0.69 0.997733
Target:  5'- aAAGCCcGGUGCgAGGAcaaCGCGCCGCg -3'
miRNA:   3'- -UUUGGcUCACGaUUUUuc-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 99787 0.69 0.997733
Target:  5'- cGGCCGGcGUGCguauGAGGUagcuguacACGCCGCu -3'
miRNA:   3'- uUUGGCU-CACGauu-UUUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 100844 0.66 0.999819
Target:  5'- ---aCGuGUGC-GAAGAGCAC-CUGCa -3'
miRNA:   3'- uuugGCuCACGaUUUUUCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 101274 0.69 0.997303
Target:  5'- -cGCCGAGUGCgc---GGCGCACa-- -3'
miRNA:   3'- uuUGGCUCACGauuuuUCGUGUGgcg -5'
29723 3' -48.3 NC_006273.1 + 104912 0.7 0.992022
Target:  5'- cGACUGAgaacgaagGUGCUcAGGuGGCACACCGUc -3'
miRNA:   3'- uUUGGCU--------CACGA-UUUuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 105453 0.67 0.999536
Target:  5'- -cACCGucGGcGCUAcaAGGAGUcgGCGCCGCa -3'
miRNA:   3'- uuUGGC--UCaCGAU--UUUUCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 105847 0.69 0.996808
Target:  5'- cAGCCGAG-GCggcgcGGCGCAgCGCc -3'
miRNA:   3'- uUUGGCUCaCGauuuuUCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 106972 0.67 0.99963
Target:  5'- cAGGCCGGG-GCgcac-AGCuuaACGCCGCu -3'
miRNA:   3'- -UUUGGCUCaCGauuuuUCG---UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 107009 0.71 0.990843
Target:  5'- --gUCGAcUGCU----AGCACACCGCg -3'
miRNA:   3'- uuuGGCUcACGAuuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 107391 0.68 0.998423
Target:  5'- gGAACCcaugggcGGUGC-----GGCGCGCCGCa -3'
miRNA:   3'- -UUUGGc------UCACGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 112094 0.68 0.999121
Target:  5'- -cAUCGAGUGgaAGGcGGCAUcucgggGCCGCg -3'
miRNA:   3'- uuUGGCUCACgaUUUuUCGUG------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 112272 0.67 0.999706
Target:  5'- uGGACCGGGUGCgcAAAcGGUAU-CUGCg -3'
miRNA:   3'- -UUUGGCUCACGauUUU-UCGUGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 113133 0.66 0.999769
Target:  5'- aAGGCgGcGgccGC-AGAGGGCGCGCCGCu -3'
miRNA:   3'- -UUUGgCuCa--CGaUUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 114559 0.69 0.997733
Target:  5'- aAGGCCGAGUccaccgucGCgcccGAAGAGgACACCGa -3'
miRNA:   3'- -UUUGGCUCA--------CGa---UUUUUCgUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 115458 0.67 0.999285
Target:  5'- uGGACCGcGUGCccguuAGCGgACUGCa -3'
miRNA:   3'- -UUUGGCuCACGauuuuUCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 117399 0.66 0.999769
Target:  5'- --uCUGAGUGCUGc--GGUuccCGCCGCu -3'
miRNA:   3'- uuuGGCUCACGAUuuuUCGu--GUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.