miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 234717 0.66 0.999819
Target:  5'- cGGACUGgcggaacgacaAGUGCUGugGAGC-CACaCGCa -3'
miRNA:   3'- -UUUGGC-----------UCACGAUuuUUCGuGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 234611 0.68 0.998104
Target:  5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3'
miRNA:   3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 234478 0.66 0.999819
Target:  5'- cGACCGAGggGC-GGGGGGCGCggcgacauGCCGUu -3'
miRNA:   3'- uUUGGCUCa-CGaUUUUUCGUG--------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 233507 0.67 0.999706
Target:  5'- gGAAUCGuGUGCgcGAAAGCcuguuCGCgGCa -3'
miRNA:   3'- -UUUGGCuCACGauUUUUCGu----GUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 233469 0.68 0.998926
Target:  5'- aAAACCaGGUGCUGAcgccagacAGAG-ACGCCGUc -3'
miRNA:   3'- -UUUGGcUCACGAUU--------UUUCgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 232806 0.66 0.999815
Target:  5'- uGACCGgauguuuGGUgGCUAGGguGAGCACcucagccucGCCGCg -3'
miRNA:   3'- uUUGGC-------UCA-CGAUUU--UUCGUG---------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 231710 0.66 0.999892
Target:  5'- --cCCGGGUcgGCguc--GGCAUGCCGCu -3'
miRNA:   3'- uuuGGCUCA--CGauuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 229752 0.67 0.999285
Target:  5'- uAACCGGG-GuCUGcgGGGCACgcccccACCGCg -3'
miRNA:   3'- uUUGGCUCaC-GAUuuUUCGUG------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 226771 1.12 0.015135
Target:  5'- cAAACCGAGUGCUAAAAAGCACACCGCg -3'
miRNA:   3'- -UUUGGCUCACGAUUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 222862 0.74 0.938449
Target:  5'- -cGCCugGAGUGCgcAGAGGCACgcauucGCCGCg -3'
miRNA:   3'- uuUGG--CUCACGauUUUUCGUG------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 221489 0.68 0.998591
Target:  5'- cAGCCGGGUGCccgaccgUGAAGAGCccucauccaccugaACagACCGCu -3'
miRNA:   3'- uUUGGCUCACG-------AUUUUUCG--------------UG--UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 212836 0.69 0.996239
Target:  5'- -uGCCG-GUGUUGAucagcAAGCACGCCa- -3'
miRNA:   3'- uuUGGCuCACGAUUu----UUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 211655 0.68 0.998104
Target:  5'- cAGCUGcAGagGCUAAAAAGCACGCaaGCc -3'
miRNA:   3'- uUUGGC-UCa-CGAUUUUUCGUGUGg-CG- -5'
29723 3' -48.3 NC_006273.1 + 209472 0.69 0.99559
Target:  5'- aAAugCGAGacgGCUAGAcagguaauGAGCACGCUGa -3'
miRNA:   3'- -UUugGCUCa--CGAUUU--------UUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 207338 0.73 0.967085
Target:  5'- gGGGCUGGGUGgaGaggGAAGGuCGCGCCGCc -3'
miRNA:   3'- -UUUGGCUCACgaU---UUUUC-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 203899 0.69 0.996239
Target:  5'- -uGCCGAuaGagauAGAGCGCGCCGCg -3'
miRNA:   3'- uuUGGCUcaCgauuUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 203724 0.7 0.994017
Target:  5'- cAGCUG-GUGCUGGAGAuaGCAgCGCa -3'
miRNA:   3'- uUUGGCuCACGAUUUUUcgUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 203587 0.72 0.982769
Target:  5'- -cGCCGGGUGCUcgcguAGAGCGCGuagUCGUa -3'
miRNA:   3'- uuUGGCUCACGAuu---UUUCGUGU---GGCG- -5'
29723 3' -48.3 NC_006273.1 + 201957 0.75 0.904014
Target:  5'- -cGCCGGG-GCUGuc--GCGCGCCGCc -3'
miRNA:   3'- uuUGGCUCaCGAUuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 198747 0.7 0.993077
Target:  5'- -cGCCGcucguUGCgccuacguAGAGGCGCACCGCg -3'
miRNA:   3'- uuUGGCuc---ACGau------UUUUCGUGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.