miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 197308 0.67 0.999699
Target:  5'- -cGCCGAGgccgcgcggcggcUGCUGcccGAGCugGaCCGCg -3'
miRNA:   3'- uuUGGCUC-------------ACGAUuu-UUCGugU-GGCG- -5'
29723 3' -48.3 NC_006273.1 + 197160 0.67 0.999422
Target:  5'- -uGCUGgugguGGUGCUGGAcGAGCuggGCGCCGUg -3'
miRNA:   3'- uuUGGC-----UCACGAUUU-UUCG---UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 196688 0.71 0.990843
Target:  5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3'
miRNA:   3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 195914 0.69 0.997303
Target:  5'- uGGugCGAGUGCUGcgccuacGGCgACGCCGg -3'
miRNA:   3'- -UUugGCUCACGAUuuu----UCG-UGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 194779 0.66 0.999819
Target:  5'- cGGACUGgcggaacgacaAGUGCUGugGAGC-CACaCGCa -3'
miRNA:   3'- -UUUGGC-----------UCACGAUuuUUCGuGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 194673 0.68 0.998104
Target:  5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3'
miRNA:   3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194500 0.67 0.999706
Target:  5'- -cGCCGguucaGGgaagGCUAGAGaaacaggugucgGGCACGCCGUc -3'
miRNA:   3'- uuUGGC-----UCa---CGAUUUU------------UCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 194432 0.77 0.844213
Target:  5'- gAAACCG-GUGCUGGGcAAGCgagucgcgACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUUU-UUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 193801 0.73 0.970224
Target:  5'- gAAGCCGAGgagGCUAu--GGCGCgGCgGCg -3'
miRNA:   3'- -UUUGGCUCa--CGAUuuuUCGUG-UGgCG- -5'
29723 3' -48.3 NC_006273.1 + 193449 0.68 0.998423
Target:  5'- gAAACCGGGaaCUAGcggcAAGgGCGCCGCu -3'
miRNA:   3'- -UUUGGCUCacGAUUu---UUCgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 189906 0.67 0.999536
Target:  5'- aAAACC-AGcugGUUGAAGAGCGCGCacaCGCg -3'
miRNA:   3'- -UUUGGcUCa--CGAUUUUUCGUGUG---GCG- -5'
29723 3' -48.3 NC_006273.1 + 188823 0.66 0.999895
Target:  5'- --cUCGAGUGCguauacggggcuGGGCACGCCa- -3'
miRNA:   3'- uuuGGCUCACGauuu--------UUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 185414 0.67 0.999422
Target:  5'- cGGCCGAcGUGgUGGAcca-GCACCGCg -3'
miRNA:   3'- uUUGGCU-CACgAUUUuucgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 185274 0.68 0.999121
Target:  5'- cGACCGcagcGGUgGCUgGAGAAGCGCAgCGUc -3'
miRNA:   3'- uUUGGC----UCA-CGA-UUUUUCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 183752 0.68 0.998423
Target:  5'- ---aCGGGUGCUGuc---CGCGCCGCc -3'
miRNA:   3'- uuugGCUCACGAUuuuucGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 183537 0.68 0.998423
Target:  5'- aAAGCa-GGUGCU-GGAAGCGCGUCGCg -3'
miRNA:   3'- -UUUGgcUCACGAuUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 178971 0.71 0.989532
Target:  5'- uGGGCCGcGUGcCUGGGAAcguGCGCACgGCg -3'
miRNA:   3'- -UUUGGCuCAC-GAUUUUU---CGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 178663 0.66 0.999819
Target:  5'- cGGCgGuGgcgGC-AAGAAGCACgACCGCg -3'
miRNA:   3'- uUUGgCuCa--CGaUUUUUCGUG-UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 178546 0.73 0.967085
Target:  5'- --cCCGGGUGCUugcaacacGAGGAGUAaacUACCGCg -3'
miRNA:   3'- uuuGGCUCACGA--------UUUUUCGU---GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 177244 0.68 0.998104
Target:  5'- -cACCGuGGUGCg--GAGGC-CGCUGCg -3'
miRNA:   3'- uuUGGC-UCACGauuUUUCGuGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.