miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 177043 0.7 0.992022
Target:  5'- -cGCC-AGcgcgcGCUGGGAAGCGCugCGCg -3'
miRNA:   3'- uuUGGcUCa----CGAUUUUUCGUGugGCG- -5'
29723 3' -48.3 NC_006273.1 + 175678 0.66 0.99986
Target:  5'- uGGCCGGuUGCUGGGGcuuGUACGCgGCc -3'
miRNA:   3'- uUUGGCUcACGAUUUUu--CGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 171542 0.73 0.956281
Target:  5'- gAGAgCGGGUGCgugGGAGAGguCACuCGCg -3'
miRNA:   3'- -UUUgGCUCACGa--UUUUUCguGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 168619 0.68 0.998423
Target:  5'- -cGCCGAGccgcgGCUGcccgGGucGCGCACCaGCg -3'
miRNA:   3'- uuUGGCUCa----CGAU----UUuuCGUGUGG-CG- -5'
29723 3' -48.3 NC_006273.1 + 163136 0.74 0.938449
Target:  5'- cGGCUGAG-GCggcGGAGGCAcCACCGCa -3'
miRNA:   3'- uUUGGCUCaCGau-UUUUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 160734 0.67 0.999536
Target:  5'- uGAACgCGGGUc---AGAAGUACGCCGCc -3'
miRNA:   3'- -UUUG-GCUCAcgauUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 160096 0.69 0.996476
Target:  5'- uGGCgGGGUGUUGAggauucaccugguauGAGGCGgcCGCCGCg -3'
miRNA:   3'- uUUGgCUCACGAUU---------------UUUCGU--GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 158353 0.67 0.999493
Target:  5'- aAGGCCGAGcgucguucgcgcgGCgugc--GCACGCCGCu -3'
miRNA:   3'- -UUUGGCUCa------------CGauuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 154936 0.68 0.998104
Target:  5'- cGACCGAGgagaUGUUGcguGAGCugGCgCGCg -3'
miRNA:   3'- uUUGGCUC----ACGAUuu-UUCGugUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 153994 0.72 0.973143
Target:  5'- cAGACCGAGgcGCUGGAGAGC-CGCUa- -3'
miRNA:   3'- -UUUGGCUCa-CGAUUUUUCGuGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 152189 0.66 0.999892
Target:  5'- cAACCGGGcGCU----GGCGCAaaUCGCa -3'
miRNA:   3'- uUUGGCUCaCGAuuuuUCGUGU--GGCG- -5'
29723 3' -48.3 NC_006273.1 + 148186 0.71 0.989532
Target:  5'- cGAGCCGcGUGUggucacGCAUGCCGCg -3'
miRNA:   3'- -UUUGGCuCACGauuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 147982 0.66 0.99986
Target:  5'- gGAGCCGgcggcggcgguGGUGgaGGAGGuuGCGCCGCa -3'
miRNA:   3'- -UUUGGC-----------UCACgaUUUUUcgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 147054 0.7 0.994852
Target:  5'- uGGCCGAcGUGCUcaucAAAcGCucGCGCCGCg -3'
miRNA:   3'- uUUGGCU-CACGAu---UUUuCG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 145131 0.68 0.998423
Target:  5'- cGACgCGcgcaaGGUGCUcAAguuucAAGGCGCGCCGCu -3'
miRNA:   3'- uUUG-GC-----UCACGA-UU-----UUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 144974 0.7 0.994017
Target:  5'- aAGGCCGAGUGUUcgGAAGUgaucguguuugACGCCaaGCa -3'
miRNA:   3'- -UUUGGCUCACGAuuUUUCG-----------UGUGG--CG- -5'
29723 3' -48.3 NC_006273.1 + 144646 0.73 0.970224
Target:  5'- gGAGCCGcguGUGCUGAucGAGGCGgCGuuGCg -3'
miRNA:   3'- -UUUGGCu--CACGAUU--UUUCGU-GUggCG- -5'
29723 3' -48.3 NC_006273.1 + 141176 0.71 0.988078
Target:  5'- -cGCCGGGggGCggc-GGGCACGCCGg -3'
miRNA:   3'- uuUGGCUCa-CGauuuUUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 140983 0.71 0.988078
Target:  5'- cGGCCGAG-GUcc-GGAGCGgGCCGCg -3'
miRNA:   3'- uUUGGCUCaCGauuUUUCGUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 140661 0.66 0.999892
Target:  5'- gGAGCUGGGUGggGGAuccccggucGCcCACCGCg -3'
miRNA:   3'- -UUUGGCUCACgaUUUuu-------CGuGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.