miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 62682 0.69 0.996754
Target:  5'- cGAUCGcGUGCUGGAAGaccacuuGCauACGCCGCg -3'
miRNA:   3'- uUUGGCuCACGAUUUUU-------CG--UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 148186 0.71 0.989532
Target:  5'- cGAGCCGcGUGUggucacGCAUGCCGCg -3'
miRNA:   3'- -UUUGGCuCACGauuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 107009 0.71 0.990843
Target:  5'- --gUCGAcUGCU----AGCACACCGCg -3'
miRNA:   3'- uuuGGCUcACGAuuuuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 196688 0.71 0.990843
Target:  5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3'
miRNA:   3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 118550 0.7 0.994017
Target:  5'- -cACCGuGauaccCUAAuAAAGCACACCGCg -3'
miRNA:   3'- uuUGGCuCac---GAUU-UUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 144974 0.7 0.994017
Target:  5'- aAGGCCGAGUGUUcgGAAGUgaucguguuugACGCCaaGCa -3'
miRNA:   3'- -UUUGGCUCACGAuuUUUCG-----------UGUGG--CG- -5'
29723 3' -48.3 NC_006273.1 + 68116 0.69 0.99559
Target:  5'- uGACCGAGacuagcgagcgGCUAGAucGCuCGCUGCg -3'
miRNA:   3'- uUUGGCUCa----------CGAUUUuuCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 209472 0.69 0.99559
Target:  5'- aAAugCGAGacgGCUAGAcagguaauGAGCACGCUGa -3'
miRNA:   3'- -UUugGCUCa--CGAUUU--------UUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 212836 0.69 0.996239
Target:  5'- -uGCCG-GUGUUGAucagcAAGCACGCCa- -3'
miRNA:   3'- uuUGGCuCACGAUUu----UUCGUGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 75211 0.71 0.988078
Target:  5'- cAACUGAGcUGCUAu--GGCACGcgcacCCGCg -3'
miRNA:   3'- uUUGGCUC-ACGAUuuuUCGUGU-----GGCG- -5'
29723 3' -48.3 NC_006273.1 + 29681 0.71 0.988078
Target:  5'- cAAACCGAG-GCUcc-AGGCGCGCaacaGCg -3'
miRNA:   3'- -UUUGGCUCaCGAuuuUUCGUGUGg---CG- -5'
29723 3' -48.3 NC_006273.1 + 33393 0.71 0.986472
Target:  5'- -uGCCaGAGUaggcGCUGGAc-GCGCACCGCc -3'
miRNA:   3'- uuUGG-CUCA----CGAUUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 222862 0.74 0.938449
Target:  5'- -cGCCugGAGUGCgcAGAGGCACgcauucGCCGCg -3'
miRNA:   3'- uuUGG--CUCACGauUUUUCGUG------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 163136 0.74 0.938449
Target:  5'- cGGCUGAG-GCggcGGAGGCAcCACCGCa -3'
miRNA:   3'- uUUGGCUCaCGau-UUUUCGU-GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 133146 0.74 0.942814
Target:  5'- ---gCGGGUGCUAAGAAGCuGCucuugcucgacguGCCGCg -3'
miRNA:   3'- uuugGCUCACGAUUUUUCG-UG-------------UGGCG- -5'
29723 3' -48.3 NC_006273.1 + 36551 0.74 0.943286
Target:  5'- gAGGCCGAGaGCcccAGAucGCGCGCCGUg -3'
miRNA:   3'- -UUUGGCUCaCGa--UUUuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 171542 0.73 0.956281
Target:  5'- gAGAgCGGGUGCgugGGAGAGguCACuCGCg -3'
miRNA:   3'- -UUUgGCUCACGa--UUUUUCguGUG-GCG- -5'
29723 3' -48.3 NC_006273.1 + 178546 0.73 0.967085
Target:  5'- --cCCGGGUGCUugcaacacGAGGAGUAaacUACCGCg -3'
miRNA:   3'- uuuGGCUCACGA--------UUUUUCGU---GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 193801 0.73 0.970224
Target:  5'- gAAGCCGAGgagGCUAu--GGCGCgGCgGCg -3'
miRNA:   3'- -UUUGGCUCa--CGAUuuuUCGUG-UGgCG- -5'
29723 3' -48.3 NC_006273.1 + 153994 0.72 0.973143
Target:  5'- cAGACCGAGgcGCUGGAGAGC-CGCUa- -3'
miRNA:   3'- -UUUGGCUCa-CGAUUUUUCGuGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.