Results 41 - 60 of 152 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 171542 | 0.73 | 0.956281 |
Target: 5'- gAGAgCGGGUGCgugGGAGAGguCACuCGCg -3' miRNA: 3'- -UUUgGCUCACGa--UUUUUCguGUG-GCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 36551 | 0.74 | 0.943286 |
Target: 5'- gAGGCCGAGaGCcccAGAucGCGCGCCGUg -3' miRNA: 3'- -UUUGGCUCaCGa--UUUuuCGUGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 133146 | 0.74 | 0.942814 |
Target: 5'- ---gCGGGUGCUAAGAAGCuGCucuugcucgacguGCCGCg -3' miRNA: 3'- uuugGCUCACGAUUUUUCG-UG-------------UGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 163136 | 0.74 | 0.938449 |
Target: 5'- cGGCUGAG-GCggcGGAGGCAcCACCGCa -3' miRNA: 3'- uUUGGCUCaCGau-UUUUCGU-GUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 222862 | 0.74 | 0.938449 |
Target: 5'- -cGCCugGAGUGCgcAGAGGCACgcauucGCCGCg -3' miRNA: 3'- uuUGG--CUCACGauUUUUCGUG------UGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 196688 | 0.71 | 0.990843 |
Target: 5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3' miRNA: 3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 118550 | 0.7 | 0.994017 |
Target: 5'- -cACCGuGauaccCUAAuAAAGCACACCGCg -3' miRNA: 3'- uuUGGCuCac---GAUU-UUUCGUGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 221489 | 0.68 | 0.998591 |
Target: 5'- cAGCCGGGUGCccgaccgUGAAGAGCccucauccaccugaACagACCGCu -3' miRNA: 3'- uUUGGCUCACG-------AUUUUUCG--------------UG--UGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 79825 | 0.68 | 0.998423 |
Target: 5'- gGAGCCGAc-GCUGAAAcGCcgACGCUGCu -3' miRNA: 3'- -UUUGGCUcaCGAUUUUuCG--UGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 211655 | 0.68 | 0.998104 |
Target: 5'- cAGCUGcAGagGCUAAAAAGCACGCaaGCc -3' miRNA: 3'- uUUGGC-UCa-CGAUUUUUCGUGUGg-CG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 194673 | 0.68 | 0.998104 |
Target: 5'- cAACgGcAGUGCgcacAAAGcgccggacacAGCACGCCGCa -3' miRNA: 3'- uUUGgC-UCACGa---UUUU----------UCGUGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 154936 | 0.68 | 0.998104 |
Target: 5'- cGACCGAGgagaUGUUGcguGAGCugGCgCGCg -3' miRNA: 3'- uUUGGCUC----ACGAUuu-UUCGugUG-GCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 61575 | 0.69 | 0.997888 |
Target: 5'- cGGCCGGGUcGCgcggccguuuGGC-CACCGCg -3' miRNA: 3'- uUUGGCUCA-CGauuuu-----UCGuGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 195914 | 0.69 | 0.997303 |
Target: 5'- uGGugCGAGUGCUGcgccuacGGCgACGCCGg -3' miRNA: 3'- -UUugGCUCACGAUuuu----UCG-UGUGGCg -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 58467 | 0.69 | 0.996808 |
Target: 5'- cAAAUCGAc-GCUAGc--GCGCACCGCg -3' miRNA: 3'- -UUUGGCUcaCGAUUuuuCGUGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 62682 | 0.69 | 0.996754 |
Target: 5'- cGAUCGcGUGCUGGAAGaccacuuGCauACGCCGCg -3' miRNA: 3'- uUUGGCuCACGAUUUUU-------CG--UGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 212836 | 0.69 | 0.996239 |
Target: 5'- -uGCCG-GUGUUGAucagcAAGCACGCCa- -3' miRNA: 3'- uuUGGCuCACGAUUu----UUCGUGUGGcg -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 209472 | 0.69 | 0.99559 |
Target: 5'- aAAugCGAGacgGCUAGAcagguaauGAGCACGCUGa -3' miRNA: 3'- -UUugGCUCa--CGAUUU--------UUCGUGUGGCg -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 68116 | 0.69 | 0.99559 |
Target: 5'- uGACCGAGacuagcgagcgGCUAGAucGCuCGCUGCg -3' miRNA: 3'- uUUGGCUCa----------CGAUUUuuCGuGUGGCG- -5' |
|||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 144974 | 0.7 | 0.994017 |
Target: 5'- aAGGCCGAGUGUUcgGAAGUgaucguguuugACGCCaaGCa -3' miRNA: 3'- -UUUGGCUCACGAuuUUUCG-----------UGUGG--CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home