Results 61 - 80 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 58467 | 0.69 | 0.996808 |
Target: 5'- cAAAUCGAc-GCUAGc--GCGCACCGCg -3' miRNA: 3'- -UUUGGCUcaCGAUUuuuCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 13598 | 0.71 | 0.988078 |
Target: 5'- cGGGCCGccGUGCUGGAGGGC-CGCCcCa -3' miRNA: 3'- -UUUGGCu-CACGAUUUUUCGuGUGGcG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 140983 | 0.71 | 0.988078 |
Target: 5'- cGGCCGAG-GUcc-GGAGCGgGCCGCg -3' miRNA: 3'- uUUGGCUCaCGauuUUUCGUgUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 178971 | 0.71 | 0.989532 |
Target: 5'- uGGGCCGcGUGcCUGGGAAcguGCGCACgGCg -3' miRNA: 3'- -UUUGGCuCAC-GAUUUUU---CGUGUGgCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 1796 | 0.71 | 0.990843 |
Target: 5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3' miRNA: 3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 15087 | 0.71 | 0.990843 |
Target: 5'- uGGGCUGuccGUGCUAAucuGGcCACGCCGUg -3' miRNA: 3'- -UUUGGCu--CACGAUUuu-UC-GUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 104912 | 0.7 | 0.992022 |
Target: 5'- cGACUGAgaacgaagGUGCUcAGGuGGCACACCGUc -3' miRNA: 3'- uUUGGCU--------CACGA-UUUuUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 177043 | 0.7 | 0.992022 |
Target: 5'- -cGCC-AGcgcgcGCUGGGAAGCGCugCGCg -3' miRNA: 3'- uuUGGcUCa----CGAUUUUUCGUGugGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 91989 | 0.7 | 0.993077 |
Target: 5'- -cGCCGGcGUGCuUAAAGAGCaACGCCu- -3' miRNA: 3'- uuUGGCU-CACG-AUUUUUCG-UGUGGcg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 141176 | 0.71 | 0.988078 |
Target: 5'- -cGCCGGGggGCggc-GGGCACGCCGg -3' miRNA: 3'- uuUGGCUCa-CGauuuUUCGUGUGGCg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 203587 | 0.72 | 0.982769 |
Target: 5'- -cGCCGGGUGCUcgcguAGAGCGCGuagUCGUa -3' miRNA: 3'- uuUGGCUCACGAuu---UUUCGUGU---GGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 16610 | 0.72 | 0.973143 |
Target: 5'- uGGCCGAGUGCgAAAuguacGuCACGCUGCa -3' miRNA: 3'- uUUGGCUCACGaUUUuu---C-GUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 20591 | 0.66 | 0.999917 |
Target: 5'- --cUCGAGUGgUucAAAAAGUuCACCGUa -3' miRNA: 3'- uuuGGCUCACgA--UUUUUCGuGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 94153 | 0.8 | 0.731214 |
Target: 5'- uGAGCCG-GUGCUGcgguccguAGGUACGCCGCa -3' miRNA: 3'- -UUUGGCuCACGAUuu------UUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 194432 | 0.77 | 0.844213 |
Target: 5'- gAAACCG-GUGCUGGGcAAGCgagucgcgACGCCGCa -3' miRNA: 3'- -UUUGGCuCACGAUUU-UUCG--------UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 201957 | 0.75 | 0.904014 |
Target: 5'- -cGCCGGG-GCUGuc--GCGCGCCGCc -3' miRNA: 3'- uuUGGCUCaCGAUuuuuCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 22140 | 0.75 | 0.928003 |
Target: 5'- uAACCGGGUGCUGAuAAGaCGgACUGUu -3' miRNA: 3'- uUUGGCUCACGAUUuUUC-GUgUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 207338 | 0.73 | 0.967085 |
Target: 5'- gGGGCUGGGUGgaGaggGAAGGuCGCGCCGCc -3' miRNA: 3'- -UUUGGCUCACgaU---UUUUC-GUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 144646 | 0.73 | 0.970224 |
Target: 5'- gGAGCCGcguGUGCUGAucGAGGCGgCGuuGCg -3' miRNA: 3'- -UUUGGCu--CACGAUU--UUUCGU-GUggCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 50224 | 0.72 | 0.973143 |
Target: 5'- --uCUGGGUGCUGuuGAGCuGC-CCGCg -3' miRNA: 3'- uuuGGCUCACGAUuuUUCG-UGuGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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