miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 226771 1.12 0.015135
Target:  5'- cAAACCGAGUGCUAAAAAGCACACCGCg -3'
miRNA:   3'- -UUUGGCUCACGAUUUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 177043 0.7 0.992022
Target:  5'- -cGCC-AGcgcgcGCUGGGAAGCGCugCGCg -3'
miRNA:   3'- uuUGGcUCa----CGAUUUUUCGUGugGCG- -5'
29723 3' -48.3 NC_006273.1 + 198747 0.7 0.993077
Target:  5'- -cGCCGcucguUGCgccuacguAGAGGCGCACCGCg -3'
miRNA:   3'- uuUGGCuc---ACGau------UUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 20591 0.66 0.999917
Target:  5'- --cUCGAGUGgUucAAAAAGUuCACCGUa -3'
miRNA:   3'- uuuGGCUCACgA--UUUUUCGuGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 22140 0.75 0.928003
Target:  5'- uAACCGGGUGCUGAuAAGaCGgACUGUu -3'
miRNA:   3'- uUUGGCUCACGAUUuUUC-GUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 207338 0.73 0.967085
Target:  5'- gGGGCUGGGUGgaGaggGAAGGuCGCGCCGCc -3'
miRNA:   3'- -UUUGGCUCACgaU---UUUUC-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 50224 0.72 0.973143
Target:  5'- --uCUGGGUGCUGuuGAGCuGC-CCGCg -3'
miRNA:   3'- uuuGGCUCACGAUuuUUCG-UGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 16610 0.72 0.973143
Target:  5'- uGGCCGAGUGCgAAAuguacGuCACGCUGCa -3'
miRNA:   3'- uUUGGCUCACGaUUUuu---C-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 13598 0.71 0.988078
Target:  5'- cGGGCCGccGUGCUGGAGGGC-CGCCcCa -3'
miRNA:   3'- -UUUGGCu-CACGAUUUUUCGuGUGGcG- -5'
29723 3' -48.3 NC_006273.1 + 104912 0.7 0.992022
Target:  5'- cGACUGAgaacgaagGUGCUcAGGuGGCACACCGUc -3'
miRNA:   3'- uUUGGCU--------CACGA-UUUuUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 178971 0.71 0.989532
Target:  5'- uGGGCCGcGUGcCUGGGAAcguGCGCACgGCg -3'
miRNA:   3'- -UUUGGCuCAC-GAUUUUU---CGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 141176 0.71 0.988078
Target:  5'- -cGCCGGGggGCggc-GGGCACGCCGg -3'
miRNA:   3'- uuUGGCUCa-CGauuuUUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 94153 0.8 0.731214
Target:  5'- uGAGCCG-GUGCUGcgguccguAGGUACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUuu------UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 1796 0.71 0.990843
Target:  5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3'
miRNA:   3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 194432 0.77 0.844213
Target:  5'- gAAACCG-GUGCUGGGcAAGCgagucgcgACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUUU-UUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 203587 0.72 0.982769
Target:  5'- -cGCCGGGUGCUcgcguAGAGCGCGuagUCGUa -3'
miRNA:   3'- uuUGGCUCACGAuu---UUUCGUGU---GGCG- -5'
29723 3' -48.3 NC_006273.1 + 15087 0.71 0.990843
Target:  5'- uGGGCUGuccGUGCUAAucuGGcCACGCCGUg -3'
miRNA:   3'- -UUUGGCu--CACGAUUuu-UC-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 91989 0.7 0.993077
Target:  5'- -cGCCGGcGUGCuUAAAGAGCaACGCCu- -3'
miRNA:   3'- uuUGGCU-CACG-AUUUUUCG-UGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 201957 0.75 0.904014
Target:  5'- -cGCCGGG-GCUGuc--GCGCGCCGCc -3'
miRNA:   3'- uuUGGCUCaCGAUuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 144646 0.73 0.970224
Target:  5'- gGAGCCGcguGUGCUGAucGAGGCGgCGuuGCg -3'
miRNA:   3'- -UUUGGCu--CACGAUU--UUUCGU-GUggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.