miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 3' -48.3 NC_006273.1 + 36752 0.69 0.99545
Target:  5'- cAGACCGGGcuccgGCggguggccuGAGCACGCCGa -3'
miRNA:   3'- -UUUGGCUCa----CGauuu-----UUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 198747 0.7 0.993077
Target:  5'- -cGCCGcucguUGCgccuacguAGAGGCGCACCGCg -3'
miRNA:   3'- uuUGGCuc---ACGau------UUUUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 141176 0.71 0.988078
Target:  5'- -cGCCGGGggGCggc-GGGCACGCCGg -3'
miRNA:   3'- uuUGGCUCa-CGauuuUUCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 201957 0.75 0.904014
Target:  5'- -cGCCGGG-GCUGuc--GCGCGCCGCc -3'
miRNA:   3'- uuUGGCUCaCGAUuuuuCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 98027 0.69 0.997733
Target:  5'- aAAGCCcGGUGCgAGGAcaaCGCGCCGCg -3'
miRNA:   3'- -UUUGGcUCACGaUUUUuc-GUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 24415 0.69 0.996808
Target:  5'- cGGCCGugguggccGUGCUGGGcuGGGUGCAUCGCu -3'
miRNA:   3'- uUUGGCu-------CACGAUUU--UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 177043 0.7 0.992022
Target:  5'- -cGCC-AGcgcgcGCUGGGAAGCGCugCGCg -3'
miRNA:   3'- uuUGGcUCa----CGAUUUUUCGUGugGCG- -5'
29723 3' -48.3 NC_006273.1 + 194432 0.77 0.844213
Target:  5'- gAAACCG-GUGCUGGGcAAGCgagucgcgACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUUU-UUCG--------UGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 160096 0.69 0.996476
Target:  5'- uGGCgGGGUGUUGAggauucaccugguauGAGGCGgcCGCCGCg -3'
miRNA:   3'- uUUGgCUCACGAUU---------------UUUCGU--GUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 94153 0.8 0.731214
Target:  5'- uGAGCCG-GUGCUGcgguccguAGGUACGCCGCa -3'
miRNA:   3'- -UUUGGCuCACGAUuu------UUCGUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 91989 0.7 0.993077
Target:  5'- -cGCCGGcGUGCuUAAAGAGCaACGCCu- -3'
miRNA:   3'- uuUGGCU-CACG-AUUUUUCG-UGUGGcg -5'
29723 3' -48.3 NC_006273.1 + 92301 0.69 0.99559
Target:  5'- -cGCUGAG-GCUGuAAucGCACAgCGCg -3'
miRNA:   3'- uuUGGCUCaCGAU-UUuuCGUGUgGCG- -5'
29723 3' -48.3 NC_006273.1 + 1796 0.71 0.990843
Target:  5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3'
miRNA:   3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5'
29723 3' -48.3 NC_006273.1 + 13598 0.71 0.988078
Target:  5'- cGGGCCGccGUGCUGGAGGGC-CGCCcCa -3'
miRNA:   3'- -UUUGGCu-CACGAUUUUUCGuGUGGcG- -5'
29723 3' -48.3 NC_006273.1 + 50224 0.72 0.973143
Target:  5'- --uCUGGGUGCUGuuGAGCuGC-CCGCg -3'
miRNA:   3'- uuuGGCUCACGAUuuUUCG-UGuGGCG- -5'
29723 3' -48.3 NC_006273.1 + 22140 0.75 0.928003
Target:  5'- uAACCGGGUGCUGAuAAGaCGgACUGUu -3'
miRNA:   3'- uUUGGCUCACGAUUuUUC-GUgUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 193449 0.68 0.998423
Target:  5'- gAAACCGGGaaCUAGcggcAAGgGCGCCGCu -3'
miRNA:   3'- -UUUGGCUCacGAUUu---UUCgUGUGGCG- -5'
29723 3' -48.3 NC_006273.1 + 114559 0.69 0.997733
Target:  5'- aAGGCCGAGUccaccgucGCgcccGAAGAGgACACCGa -3'
miRNA:   3'- -UUUGGCUCA--------CGa---UUUUUCgUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 90821 0.69 0.997303
Target:  5'- cAGACCGAG-GCc--GucGCGCACCGg -3'
miRNA:   3'- -UUUGGCUCaCGauuUuuCGUGUGGCg -5'
29723 3' -48.3 NC_006273.1 + 105847 0.69 0.996808
Target:  5'- cAGCCGAG-GCggcgcGGCGCAgCGCc -3'
miRNA:   3'- uUUGGCUCaCGauuuuUCGUGUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.