Results 41 - 60 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 3' | -48.3 | NC_006273.1 | + | 99787 | 0.69 | 0.997733 |
Target: 5'- cGGCCGGcGUGCguauGAGGUagcuguacACGCCGCu -3' miRNA: 3'- uUUGGCU-CACGauu-UUUCG--------UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 177043 | 0.7 | 0.992022 |
Target: 5'- -cGCC-AGcgcgcGCUGGGAAGCGCugCGCg -3' miRNA: 3'- uuUGGcUCa----CGAUUUUUCGUGugGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 194432 | 0.77 | 0.844213 |
Target: 5'- gAAACCG-GUGCUGGGcAAGCgagucgcgACGCCGCa -3' miRNA: 3'- -UUUGGCuCACGAUUU-UUCG--------UGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 101274 | 0.69 | 0.997303 |
Target: 5'- -cGCCGAGUGCgc---GGCGCACa-- -3' miRNA: 3'- uuUGGCUCACGauuuuUCGUGUGgcg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 94153 | 0.8 | 0.731214 |
Target: 5'- uGAGCCG-GUGCUGcgguccguAGGUACGCCGCa -3' miRNA: 3'- -UUUGGCuCACGAUuu------UUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 89541 | 0.67 | 0.999422 |
Target: 5'- gGAGCCuuGUccucGCgAAAcgucGAGCGCACCGCg -3' miRNA: 3'- -UUUGGcuCA----CGaUUU----UUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 22140 | 0.75 | 0.928003 |
Target: 5'- uAACCGGGUGCUGAuAAGaCGgACUGUu -3' miRNA: 3'- uUUGGCUCACGAUUuUUC-GUgUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 55454 | 0.67 | 0.999422 |
Target: 5'- uGAGUCGGGcGgUGGccGGCACGCCGCa -3' miRNA: 3'- -UUUGGCUCaCgAUUuuUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 115458 | 0.67 | 0.999285 |
Target: 5'- uGGACCGcGUGCccguuAGCGgACUGCa -3' miRNA: 3'- -UUUGGCuCACGauuuuUCGUgUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 119395 | 0.68 | 0.998423 |
Target: 5'- cGGCCGuGUucgaUGAAAcGCGCGCCGCc -3' miRNA: 3'- uUUGGCuCAcg--AUUUUuCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 168619 | 0.68 | 0.998423 |
Target: 5'- -cGCCGAGccgcgGCUGcccgGGucGCGCACCaGCg -3' miRNA: 3'- uuUGGCUCa----CGAU----UUuuCGUGUGG-CG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 193449 | 0.68 | 0.998423 |
Target: 5'- gAAACCGGGaaCUAGcggcAAGgGCGCCGCu -3' miRNA: 3'- -UUUGGCUCacGAUUu---UUCgUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 114559 | 0.69 | 0.997733 |
Target: 5'- aAGGCCGAGUccaccgucGCgcccGAAGAGgACACCGa -3' miRNA: 3'- -UUUGGCUCA--------CGa---UUUUUCgUGUGGCg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 1021 | 0.69 | 0.997303 |
Target: 5'- uGGugCGAGUGCUGcgccuacGGCgACGCCGg -3' miRNA: 3'- -UUugGCUCACGAUuuu----UCG-UGUGGCg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 160096 | 0.69 | 0.996476 |
Target: 5'- uGGCgGGGUGUUGAggauucaccugguauGAGGCGgcCGCCGCg -3' miRNA: 3'- uUUGgCUCACGAUU---------------UUUCGU--GUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 36752 | 0.69 | 0.99545 |
Target: 5'- cAGACCGGGcuccgGCggguggccuGAGCACGCCGa -3' miRNA: 3'- -UUUGGCUCa----CGauuu-----UUCGUGUGGCg -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 198747 | 0.7 | 0.993077 |
Target: 5'- -cGCCGcucguUGCgccuacguAGAGGCGCACCGCg -3' miRNA: 3'- uuUGGCuc---ACGau------UUUUCGUGUGGCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 1796 | 0.71 | 0.990843 |
Target: 5'- cAGCCGAugGUGCUGcuGGGCGCGUgGCa -3' miRNA: 3'- uUUGGCU--CACGAUuuUUCGUGUGgCG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 13598 | 0.71 | 0.988078 |
Target: 5'- cGGGCCGccGUGCUGGAGGGC-CGCCcCa -3' miRNA: 3'- -UUUGGCu-CACGAUUUUUCGuGUGGcG- -5' |
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29723 | 3' | -48.3 | NC_006273.1 | + | 50224 | 0.72 | 0.973143 |
Target: 5'- --uCUGGGUGCUGuuGAGCuGC-CCGCg -3' miRNA: 3'- uuuGGCUCACGAUuuUUCG-UGuGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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