miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 171545 0.68 1
Target:  5'- -aGCGGGUGCGUGggAGAggucacucGCGgCGUGc -3'
miRNA:   3'- ugCGCCUAUGUAUaaUUU--------UGUgGCAC- -5'
29723 5' -44.2 NC_006273.1 + 183104 0.66 1
Target:  5'- -aGUGGAUaacaGCAUGUUAuucGC-CCGUGa -3'
miRNA:   3'- ugCGCCUA----UGUAUAAUuu-UGuGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 234156 0.66 1
Target:  5'- gGCGCGGcccGUGC-UGUUggccaGAAACGCCGc- -3'
miRNA:   3'- -UGCGCC---UAUGuAUAA-----UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 59210 0.66 1
Target:  5'- cACGCGGAUagcggccacgucccACAUGUccacAAACACaCGUa -3'
miRNA:   3'- -UGCGCCUA--------------UGUAUAau--UUUGUG-GCAc -5'
29723 5' -44.2 NC_006273.1 + 232908 0.66 1
Target:  5'- cGCGCGGGUGCAgg-UGcAGCGCg--- -3'
miRNA:   3'- -UGCGCCUAUGUauaAUuUUGUGgcac -5'
29723 5' -44.2 NC_006273.1 + 43443 0.66 1
Target:  5'- -gGCGGAUACGcgGUUuucacccGGGCGCCGcUGa -3'
miRNA:   3'- ugCGCCUAUGUa-UAAu------UUUGUGGC-AC- -5'
29723 5' -44.2 NC_006273.1 + 117165 0.66 1
Target:  5'- -gGCGGcGUGCGUuAUUAAAGCGgCGUc -3'
miRNA:   3'- ugCGCC-UAUGUA-UAAUUUUGUgGCAc -5'
29723 5' -44.2 NC_006273.1 + 192144 0.66 1
Target:  5'- -gGCGGcUACAgcuccAAGCGCCGUa -3'
miRNA:   3'- ugCGCCuAUGUauaauUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 129730 0.66 1
Target:  5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3'
miRNA:   3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 71609 0.67 1
Target:  5'- gGCGCGGuguuagACAUG---GGGCagGCCGUGg -3'
miRNA:   3'- -UGCGCCua----UGUAUaauUUUG--UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 204757 0.67 1
Target:  5'- gUGCGGGaGCc----GAAACACCGUGc -3'
miRNA:   3'- uGCGCCUaUGuauaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 132710 0.67 1
Target:  5'- gGCGCGacgguGAUGCGaGUggugAGAGCGCCGg- -3'
miRNA:   3'- -UGCGC-----CUAUGUaUAa---UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 61721 0.67 1
Target:  5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3'
miRNA:   3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 115957 0.67 1
Target:  5'- aGCGCGGGUgACAUA----GGCGCUGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 234494 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 123811 0.67 1
Target:  5'- uCGCGGggGCGguUUGAGACucGCCGUu -3'
miRNA:   3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 203800 0.67 1
Target:  5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3'
miRNA:   3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 53033 0.67 1
Target:  5'- gUGUGGGUcucACGUcgucUUGAAACACCGUc -3'
miRNA:   3'- uGCGCCUA---UGUAu---AAUUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 147951 0.67 1
Target:  5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3'
miRNA:   3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 196286 0.67 1
Target:  5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3'
miRNA:   3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.