miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 117165 0.66 1
Target:  5'- -gGCGGcGUGCGUuAUUAAAGCGgCGUc -3'
miRNA:   3'- ugCGCC-UAUGUA-UAAUUUUGUgGCAc -5'
29723 5' -44.2 NC_006273.1 + 234156 0.66 1
Target:  5'- gGCGCGGcccGUGC-UGUUggccaGAAACGCCGc- -3'
miRNA:   3'- -UGCGCC---UAUGuAUAA-----UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 59210 0.66 1
Target:  5'- cACGCGGAUagcggccacgucccACAUGUccacAAACACaCGUa -3'
miRNA:   3'- -UGCGCCUA--------------UGUAUAau--UUUGUG-GCAc -5'
29723 5' -44.2 NC_006273.1 + 43443 0.66 1
Target:  5'- -gGCGGAUACGcgGUUuucacccGGGCGCCGcUGa -3'
miRNA:   3'- ugCGCCUAUGUa-UAAu------UUUGUGGC-AC- -5'
29723 5' -44.2 NC_006273.1 + 150273 0.66 1
Target:  5'- gAUGUGGAUGCAcGUgcgGGAGC-UCGUGc -3'
miRNA:   3'- -UGCGCCUAUGUaUAa--UUUUGuGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 183104 0.66 1
Target:  5'- -aGUGGAUaacaGCAUGUUAuucGC-CCGUGa -3'
miRNA:   3'- ugCGCCUA----UGUAUAAUuu-UGuGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 192144 0.66 1
Target:  5'- -gGCGGcUACAgcuccAAGCGCCGUa -3'
miRNA:   3'- ugCGCCuAUGUauaauUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 162193 0.66 1
Target:  5'- -gGCGGAgGCGgugGUUGcgGCGCCGc- -3'
miRNA:   3'- ugCGCCUaUGUa--UAAUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 51073 0.66 1
Target:  5'- cCGUGGuacGUACAUcgaacaGAAACACCGUa -3'
miRNA:   3'- uGCGCC---UAUGUAuaa---UUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 232908 0.66 1
Target:  5'- cGCGCGGGUGCAgg-UGcAGCGCg--- -3'
miRNA:   3'- -UGCGCCUAUGUauaAUuUUGUGgcac -5'
29723 5' -44.2 NC_006273.1 + 5428 0.66 1
Target:  5'- cACGgGGAuuUACGcuauguuguuUAUUGucACGCCGUGu -3'
miRNA:   3'- -UGCgCCU--AUGU----------AUAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 70949 0.66 1
Target:  5'- gACGCGGcGUGCugcugcucAAUACCGUGu -3'
miRNA:   3'- -UGCGCC-UAUGuauaauu-UUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 117761 0.66 1
Target:  5'- cACGCGGggGCGccgUAGGACGCgGg- -3'
miRNA:   3'- -UGCGCCuaUGUauaAUUUUGUGgCac -5'
29723 5' -44.2 NC_006273.1 + 72841 0.66 1
Target:  5'- uACGgGGGgcucACAguccacucggAAAGCACCGUGa -3'
miRNA:   3'- -UGCgCCUa---UGUauaa------UUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 39263 0.66 1
Target:  5'- gGCGCGGcccGUGC-UGUUggccaGAAACGCCGc- -3'
miRNA:   3'- -UGCGCC---UAUGuAUAA-----UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 38015 0.66 1
Target:  5'- cGCGCGGGUGCAgg-UGcAGCGCg--- -3'
miRNA:   3'- -UGCGCCUAUGUauaAUuUUGUGgcac -5'
29723 5' -44.2 NC_006273.1 + 167543 0.66 1
Target:  5'- gUGCGGGUgacagcgccgcucuACAUcacccGUUAGcACGCCGUGc -3'
miRNA:   3'- uGCGCCUA--------------UGUA-----UAAUUuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 100831 0.66 1
Target:  5'- aACGUGGucucuUACGUGUgcgaAGAGCACCu-- -3'
miRNA:   3'- -UGCGCCu----AUGUAUAa---UUUUGUGGcac -5'
29723 5' -44.2 NC_006273.1 + 129730 0.66 1
Target:  5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3'
miRNA:   3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 25429 0.66 1
Target:  5'- cGCGUGGcgcUGCAcaccuauGGCGCCGUGg -3'
miRNA:   3'- -UGCGCCu--AUGUauaauu-UUGUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.