miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 167543 0.66 1
Target:  5'- gUGCGGGUgacagcgccgcucuACAUcacccGUUAGcACGCCGUGc -3'
miRNA:   3'- uGCGCCUA--------------UGUA-----UAAUUuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 17099 0.67 1
Target:  5'- cCGCGGcgACuucgcGGAACGCCGUc -3'
miRNA:   3'- uGCGCCuaUGuauaaUUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 196286 0.67 1
Target:  5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3'
miRNA:   3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 72147 0.67 1
Target:  5'- aACGCGGAcUGCGaggaggcUGAGGCGCCGc- -3'
miRNA:   3'- -UGCGCCU-AUGUaua----AUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 35006 0.67 1
Target:  5'- -gGUGGGUACccgGUGUcgc-ACACCGUGg -3'
miRNA:   3'- ugCGCCUAUG---UAUAauuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 177545 0.67 1
Target:  5'- gGCGCGGc--UGUAUUAuuAGACGCCGg- -3'
miRNA:   3'- -UGCGCCuauGUAUAAU--UUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 29311 0.67 1
Target:  5'- uACGCGGAU-CGaGUgccGACGCCGgUGg -3'
miRNA:   3'- -UGCGCCUAuGUaUAauuUUGUGGC-AC- -5'
29723 5' -44.2 NC_006273.1 + 147951 0.67 1
Target:  5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3'
miRNA:   3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 53033 0.67 1
Target:  5'- gUGUGGGUcucACGUcgucUUGAAACACCGUc -3'
miRNA:   3'- uGCGCCUA---UGUAu---AAUUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 195689 0.67 1
Target:  5'- -aGUGGAUAuCGUAaggcgcguGCACCGUGa -3'
miRNA:   3'- ugCGCCUAU-GUAUaauuu---UGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 178999 0.67 1
Target:  5'- gGCGCGGucccGCgAUGgagAAAACGCCGg- -3'
miRNA:   3'- -UGCGCCua--UG-UAUaa-UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 1393 0.67 1
Target:  5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3'
miRNA:   3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 198969 0.67 1
Target:  5'- cUGCGGcgACAc----GGGCACCGUGu -3'
miRNA:   3'- uGCGCCuaUGUauaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 199802 0.67 1
Target:  5'- uACGUGGAUGagAUcgUAGAGgGCgCGUGg -3'
miRNA:   3'- -UGCGCCUAUg-UAuaAUUUUgUG-GCAC- -5'
29723 5' -44.2 NC_006273.1 + 23421 0.67 1
Target:  5'- uAUGCGGGUcuACA-------GCACCGUGg -3'
miRNA:   3'- -UGCGCCUA--UGUauaauuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 61721 0.67 1
Target:  5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3'
miRNA:   3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 115957 0.67 1
Target:  5'- aGCGCGGGUgACAUA----GGCGCUGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 234494 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 123811 0.67 1
Target:  5'- uCGCGGggGCGguUUGAGACucGCCGUu -3'
miRNA:   3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 203800 0.67 1
Target:  5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3'
miRNA:   3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.