Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 5' | -44.2 | NC_006273.1 | + | 196286 | 0.67 | 1 |
Target: 5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3' miRNA: 3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 147951 | 0.67 | 1 |
Target: 5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3' miRNA: 3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 61721 | 0.67 | 1 |
Target: 5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3' miRNA: 3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 53033 | 0.67 | 1 |
Target: 5'- gUGUGGGUcucACGUcgucUUGAAACACCGUc -3' miRNA: 3'- uGCGCCUA---UGUAu---AAUUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 203800 | 0.67 | 1 |
Target: 5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3' miRNA: 3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 123811 | 0.67 | 1 |
Target: 5'- uCGCGGggGCGguUUGAGACucGCCGUu -3' miRNA: 3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 234494 | 0.67 | 1 |
Target: 5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3' miRNA: 3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 171545 | 0.68 | 1 |
Target: 5'- -aGCGGGUGCGUGggAGAggucacucGCGgCGUGc -3' miRNA: 3'- ugCGCCUAUGUAUaaUUU--------UGUgGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 93442 | 0.68 | 1 |
Target: 5'- cAUGCGGAaaaagucGCGUGUccAAGCACgGUGg -3' miRNA: 3'- -UGCGCCUa------UGUAUAauUUUGUGgCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 27562 | 0.68 | 0.999999 |
Target: 5'- aACGCGGuuauCGUGUUuu-GCAgCGUGa -3' miRNA: 3'- -UGCGCCuau-GUAUAAuuuUGUgGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 57083 | 0.68 | 0.999999 |
Target: 5'- cACGuuGAUacGCAUGUUuuucACGCCGUGg -3' miRNA: 3'- -UGCgcCUA--UGUAUAAuuu-UGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 89275 | 0.68 | 0.999999 |
Target: 5'- uGCGCGacgACGUggUGGAgaacGCGCCGUGa -3' miRNA: 3'- -UGCGCcuaUGUAuaAUUU----UGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 39435 | 0.68 | 1 |
Target: 5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3' miRNA: 3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 234328 | 0.68 | 1 |
Target: 5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3' miRNA: 3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 8398 | 0.69 | 0.999995 |
Target: 5'- aGCGCcgaGGGUAgGUgcGUUuuGGCGCCGUGc -3' miRNA: 3'- -UGCG---CCUAUgUA--UAAuuUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 80097 | 0.69 | 0.999998 |
Target: 5'- uCGCGGAagguagugUACAUGU----GCACCGUc -3' miRNA: 3'- uGCGCCU--------AUGUAUAauuuUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 161720 | 0.69 | 0.999993 |
Target: 5'- gAUGCGGAUGCGcaagcgAggGAGACGCUGaUGa -3' miRNA: 3'- -UGCGCCUAUGUa-----UaaUUUUGUGGC-AC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 34598 | 0.69 | 0.99999 |
Target: 5'- cCGCGGAUGuCGUAcUUGccguGCGCCGUa -3' miRNA: 3'- uGCGCCUAU-GUAU-AAUuu--UGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 37255 | 0.69 | 0.999993 |
Target: 5'- -gGCGGcgACGacgaggAggAAGACGCCGUGg -3' miRNA: 3'- ugCGCCuaUGUa-----UaaUUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 42329 | 0.69 | 0.999993 |
Target: 5'- uGCGUGGggACAUGUUucuuGggUACCGa- -3' miRNA: 3'- -UGCGCCuaUGUAUAAu---UuuGUGGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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