miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 171545 0.68 1
Target:  5'- -aGCGGGUGCGUGggAGAggucacucGCGgCGUGc -3'
miRNA:   3'- ugCGCCUAUGUAUaaUUU--------UGUgGCAC- -5'
29723 5' -44.2 NC_006273.1 + 39435 0.68 1
Target:  5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3'
miRNA:   3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 93442 0.68 1
Target:  5'- cAUGCGGAaaaagucGCGUGUccAAGCACgGUGg -3'
miRNA:   3'- -UGCGCCUa------UGUAUAauUUUGUGgCAC- -5'
29723 5' -44.2 NC_006273.1 + 115957 0.67 1
Target:  5'- aGCGCGGGUgACAUA----GGCGCUGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 132710 0.67 1
Target:  5'- gGCGCGacgguGAUGCGaGUggugAGAGCGCCGg- -3'
miRNA:   3'- -UGCGC-----CUAUGUaUAa---UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 196286 0.67 1
Target:  5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3'
miRNA:   3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 147951 0.67 1
Target:  5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3'
miRNA:   3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 53033 0.67 1
Target:  5'- gUGUGGGUcucACGUcgucUUGAAACACCGUc -3'
miRNA:   3'- uGCGCCUA---UGUAu---AAUUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 203800 0.67 1
Target:  5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3'
miRNA:   3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 123811 0.67 1
Target:  5'- uCGCGGggGCGguUUGAGACucGCCGUu -3'
miRNA:   3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 234494 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 61721 0.67 1
Target:  5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3'
miRNA:   3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 204757 0.67 1
Target:  5'- gUGCGGGaGCc----GAAACACCGUGc -3'
miRNA:   3'- uGCGCCUaUGuauaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 71609 0.67 1
Target:  5'- gGCGCGGuguuagACAUG---GGGCagGCCGUGg -3'
miRNA:   3'- -UGCGCCua----UGUAUaauUUUG--UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 23421 0.67 1
Target:  5'- uAUGCGGGUcuACA-------GCACCGUGg -3'
miRNA:   3'- -UGCGCCUA--UGUauaauuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 39601 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 199802 0.67 1
Target:  5'- uACGUGGAUGagAUcgUAGAGgGCgCGUGg -3'
miRNA:   3'- -UGCGCCUAUg-UAuaAUUUUgUG-GCAC- -5'
29723 5' -44.2 NC_006273.1 + 214735 0.67 1
Target:  5'- gACGUGGuuccuCGUucugccGGAGCACCGUGg -3'
miRNA:   3'- -UGCGCCuau--GUAuaa---UUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 34597 0.67 1
Target:  5'- aACGC---UAUAUAUUcaAAAACACCGUGc -3'
miRNA:   3'- -UGCGccuAUGUAUAA--UUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 195689 0.67 1
Target:  5'- -aGUGGAUAuCGUAaggcgcguGCACCGUGa -3'
miRNA:   3'- ugCGCCUAU-GUAUaauuu---UGUGGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.