miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 226806 1.09 0.061282
Target:  5'- cACGCGGAUACAUAUUAAAACACCGUGu -3'
miRNA:   3'- -UGCGCCUAUGUAUAAUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 127207 0.8 0.940144
Target:  5'- aACGCGG-UACGUcc-GAAACGCCGUGg -3'
miRNA:   3'- -UGCGCCuAUGUAuaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 202265 0.8 0.953842
Target:  5'- cCGCGGcgGCGcGUUAuAAGCACCGUGg -3'
miRNA:   3'- uGCGCCuaUGUaUAAU-UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 15299 0.77 0.987453
Target:  5'- uACGgGGAUcacGCAUgcgagucucAUUAGGACACCGUGu -3'
miRNA:   3'- -UGCgCCUA---UGUA---------UAAUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 62187 0.77 0.987453
Target:  5'- gGCGCGGcccUACGUcaAUUGucGCGCCGUGg -3'
miRNA:   3'- -UGCGCCu--AUGUA--UAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 165109 0.75 0.996075
Target:  5'- cACGCGGAU-CAUc-UGAAGCACCGg- -3'
miRNA:   3'- -UGCGCCUAuGUAuaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 195846 0.75 0.997195
Target:  5'- gGCGCGcg-GCAUGUUGc-GCGCCGUGa -3'
miRNA:   3'- -UGCGCcuaUGUAUAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 197762 0.74 0.998035
Target:  5'- cGCGCGGGUcGCGUGUUGAcgGAC-CCGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUAAUU--UUGuGGCac -5'
29723 5' -44.2 NC_006273.1 + 171057 0.74 0.998369
Target:  5'- cAUGCGGAgucGCGgcgGUUGGGGCGCCGa- -3'
miRNA:   3'- -UGCGCCUa--UGUa--UAAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 195409 0.73 0.999268
Target:  5'- -gGCGGcGUGCAUcugccGAAACACCGUGu -3'
miRNA:   3'- ugCGCC-UAUGUAuaa--UUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 39473 0.72 0.999597
Target:  5'- gACGCGGA-ACAgcgccaacugcuGGGCACCGUGg -3'
miRNA:   3'- -UGCGCCUaUGUauaau-------UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 14012 0.72 0.999703
Target:  5'- gGCGCGGGgugGCGgagcggGGAGCGCCGa- -3'
miRNA:   3'- -UGCGCCUa--UGUauaa--UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 25407 0.72 0.999767
Target:  5'- gACGCGGuuuCGUGUUGAAAC-CCGc- -3'
miRNA:   3'- -UGCGCCuauGUAUAAUUUUGuGGCac -5'
29723 5' -44.2 NC_006273.1 + 44427 0.71 0.99986
Target:  5'- uACGUGGGUAgG----AGGGCACCGUGc -3'
miRNA:   3'- -UGCGCCUAUgUauaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 61684 0.71 0.99986
Target:  5'- -aGCGGAgGCGUu---AAAUACCGUGa -3'
miRNA:   3'- ugCGCCUaUGUAuaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 146328 0.71 0.999918
Target:  5'- aACGCGGGUaGCGUGUUuuuuCGCCGc- -3'
miRNA:   3'- -UGCGCCUA-UGUAUAAuuuuGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 116486 0.71 0.999938
Target:  5'- cCGCGGG-ACGUAgUGGAGCACUGg- -3'
miRNA:   3'- uGCGCCUaUGUAUaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 26842 0.71 0.999954
Target:  5'- aAC-CGGGUACAUGggggGGAACAUCGUc -3'
miRNA:   3'- -UGcGCCUAUGUAUaa--UUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 166795 0.71 0.999954
Target:  5'- gAUGCGGGUGCGUAggGuc-CGCgGUGa -3'
miRNA:   3'- -UGCGCCUAUGUAUaaUuuuGUGgCAC- -5'
29723 5' -44.2 NC_006273.1 + 165800 0.7 0.999966
Target:  5'- cCGCgGGGUGCGUGUggcucUGAuGCugCGUGa -3'
miRNA:   3'- uGCG-CCUAUGUAUA-----AUUuUGugGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.