Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 5' | -44.2 | NC_006273.1 | + | 132710 | 0.67 | 1 |
Target: 5'- gGCGCGacgguGAUGCGaGUggugAGAGCGCCGg- -3' miRNA: 3'- -UGCGC-----CUAUGUaUAa---UUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 123811 | 0.67 | 1 |
Target: 5'- uCGCGGggGCGguUUGAGACucGCCGUu -3' miRNA: 3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 51073 | 0.66 | 1 |
Target: 5'- cCGUGGuacGUACAUcgaacaGAAACACCGUa -3' miRNA: 3'- uGCGCC---UAUGUAuaa---UUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 61721 | 0.67 | 1 |
Target: 5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3' miRNA: 3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 115957 | 0.67 | 1 |
Target: 5'- aGCGCGGGUgACAUA----GGCGCUGg- -3' miRNA: 3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 234494 | 0.67 | 1 |
Target: 5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3' miRNA: 3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 203800 | 0.67 | 1 |
Target: 5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3' miRNA: 3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 53033 | 0.67 | 1 |
Target: 5'- gUGUGGGUcucACGUcgucUUGAAACACCGUc -3' miRNA: 3'- uGCGCCUA---UGUAu---AAUUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 147951 | 0.67 | 1 |
Target: 5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3' miRNA: 3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 196286 | 0.67 | 1 |
Target: 5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3' miRNA: 3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 129730 | 0.66 | 1 |
Target: 5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3' miRNA: 3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 204757 | 0.67 | 1 |
Target: 5'- gUGCGGGaGCc----GAAACACCGUGc -3' miRNA: 3'- uGCGCCUaUGuauaaUUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 71609 | 0.67 | 1 |
Target: 5'- gGCGCGGuguuagACAUG---GGGCagGCCGUGg -3' miRNA: 3'- -UGCGCCua----UGUAUaauUUUG--UGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 183104 | 0.66 | 1 |
Target: 5'- -aGUGGAUaacaGCAUGUUAuucGC-CCGUGa -3' miRNA: 3'- ugCGCCUA----UGUAUAAUuu-UGuGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 232908 | 0.66 | 1 |
Target: 5'- cGCGCGGGUGCAgg-UGcAGCGCg--- -3' miRNA: 3'- -UGCGCCUAUGUauaAUuUUGUGgcac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 59210 | 0.66 | 1 |
Target: 5'- cACGCGGAUagcggccacgucccACAUGUccacAAACACaCGUa -3' miRNA: 3'- -UGCGCCUA--------------UGUAUAau--UUUGUG-GCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 43443 | 0.66 | 1 |
Target: 5'- -gGCGGAUACGcgGUUuucacccGGGCGCCGcUGa -3' miRNA: 3'- ugCGCCUAUGUa-UAAu------UUUGUGGC-AC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 117165 | 0.66 | 1 |
Target: 5'- -gGCGGcGUGCGUuAUUAAAGCGgCGUc -3' miRNA: 3'- ugCGCC-UAUGUA-UAAUUUUGUgGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 192144 | 0.66 | 1 |
Target: 5'- -gGCGGcUACAgcuccAAGCGCCGUa -3' miRNA: 3'- ugCGCCuAUGUauaauUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 162193 | 0.66 | 1 |
Target: 5'- -gGCGGAgGCGgugGUUGcgGCGCCGc- -3' miRNA: 3'- ugCGCCUaUGUa--UAAUuuUGUGGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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