Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29723 | 5' | -44.2 | NC_006273.1 | + | 234328 | 0.68 | 1 |
Target: 5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3' miRNA: 3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 129730 | 0.66 | 1 |
Target: 5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3' miRNA: 3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 39435 | 0.68 | 1 |
Target: 5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3' miRNA: 3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 1393 | 0.67 | 1 |
Target: 5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3' miRNA: 3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 35006 | 0.67 | 1 |
Target: 5'- -gGUGGGUACccgGUGUcgc-ACACCGUGg -3' miRNA: 3'- ugCGCCUAUG---UAUAauuuUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 39601 | 0.67 | 1 |
Target: 5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3' miRNA: 3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 104163 | 0.67 | 1 |
Target: 5'- aGCGCGGccuuCAUAUUGAuAACGCgGUu -3' miRNA: 3'- -UGCGCCuau-GUAUAAUU-UUGUGgCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 199802 | 0.67 | 1 |
Target: 5'- uACGUGGAUGagAUcgUAGAGgGCgCGUGg -3' miRNA: 3'- -UGCGCCUAUg-UAuaAUUUUgUG-GCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 29311 | 0.67 | 1 |
Target: 5'- uACGCGGAU-CGaGUgccGACGCCGgUGg -3' miRNA: 3'- -UGCGCCUAuGUaUAauuUUGUGGC-AC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 23421 | 0.67 | 1 |
Target: 5'- uAUGCGGGUcuACA-------GCACCGUGg -3' miRNA: 3'- -UGCGCCUA--UGUauaauuuUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 93442 | 0.68 | 1 |
Target: 5'- cAUGCGGAaaaagucGCGUGUccAAGCACgGUGg -3' miRNA: 3'- -UGCGCCUa------UGUAUAauUUUGUGgCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 214735 | 0.67 | 1 |
Target: 5'- gACGUGGuuccuCGUucugccGGAGCACCGUGg -3' miRNA: 3'- -UGCGCCuau--GUAuaa---UUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 98584 | 0.66 | 1 |
Target: 5'- uCGCGGAgACGc---GAGACACCGg- -3' miRNA: 3'- uGCGCCUaUGUauaaUUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 178999 | 0.67 | 1 |
Target: 5'- gGCGCGGucccGCgAUGgagAAAACGCCGg- -3' miRNA: 3'- -UGCGCCua--UG-UAUaa-UUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 17099 | 0.67 | 1 |
Target: 5'- cCGCGGcgACuucgcGGAACGCCGUc -3' miRNA: 3'- uGCGCCuaUGuauaaUUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 72147 | 0.67 | 1 |
Target: 5'- aACGCGGAcUGCGaggaggcUGAGGCGCCGc- -3' miRNA: 3'- -UGCGCCU-AUGUaua----AUUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 177545 | 0.67 | 1 |
Target: 5'- gGCGCGGc--UGUAUUAuuAGACGCCGg- -3' miRNA: 3'- -UGCGCCuauGUAUAAU--UUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 198969 | 0.67 | 1 |
Target: 5'- cUGCGGcgACAc----GGGCACCGUGu -3' miRNA: 3'- uGCGCCuaUGUauaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 195689 | 0.67 | 1 |
Target: 5'- -aGUGGAUAuCGUAaggcgcguGCACCGUGa -3' miRNA: 3'- ugCGCCUAU-GUAUaauuu---UGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 34597 | 0.67 | 1 |
Target: 5'- aACGC---UAUAUAUUcaAAAACACCGUGc -3' miRNA: 3'- -UGCGccuAUGUAUAA--UUUUGUGGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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