miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 39601 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 93442 0.68 1
Target:  5'- cAUGCGGAaaaagucGCGUGUccAAGCACgGUGg -3'
miRNA:   3'- -UGCGCCUa------UGUAUAauUUUGUGgCAC- -5'
29723 5' -44.2 NC_006273.1 + 167543 0.66 1
Target:  5'- gUGCGGGUgacagcgccgcucuACAUcacccGUUAGcACGCCGUGc -3'
miRNA:   3'- uGCGCCUA--------------UGUA-----UAAUUuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 61721 0.67 1
Target:  5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3'
miRNA:   3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 115957 0.67 1
Target:  5'- aGCGCGGGUgACAUA----GGCGCUGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 123811 0.67 1
Target:  5'- uCGCGGggGCGguUUGAGACucGCCGUu -3'
miRNA:   3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 171545 0.68 1
Target:  5'- -aGCGGGUGCGUGggAGAggucacucGCGgCGUGc -3'
miRNA:   3'- ugCGCCUAUGUAUaaUUU--------UGUgGCAC- -5'
29723 5' -44.2 NC_006273.1 + 234328 0.68 1
Target:  5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3'
miRNA:   3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 234494 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 203800 0.67 1
Target:  5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3'
miRNA:   3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 129730 0.66 1
Target:  5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3'
miRNA:   3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 27562 0.68 0.999999
Target:  5'- aACGCGGuuauCGUGUUuu-GCAgCGUGa -3'
miRNA:   3'- -UGCGCCuau-GUAUAAuuuUGUgGCAC- -5'
29723 5' -44.2 NC_006273.1 + 57083 0.68 0.999999
Target:  5'- cACGuuGAUacGCAUGUUuuucACGCCGUGg -3'
miRNA:   3'- -UGCgcCUA--UGUAUAAuuu-UGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 89275 0.68 0.999999
Target:  5'- uGCGCGacgACGUggUGGAgaacGCGCCGUGa -3'
miRNA:   3'- -UGCGCcuaUGUAuaAUUU----UGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 80097 0.69 0.999998
Target:  5'- uCGCGGAagguagugUACAUGU----GCACCGUc -3'
miRNA:   3'- uGCGCCU--------AUGUAUAauuuUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 12813 0.69 0.999998
Target:  5'- aGCGUGGAUAU--GUUGuua-ACCGUGg -3'
miRNA:   3'- -UGCGCCUAUGuaUAAUuuugUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 2243 0.69 0.999998
Target:  5'- cGCGUGGAUGCcgGccGAGACAUuuaCGUGu -3'
miRNA:   3'- -UGCGCCUAUGuaUaaUUUUGUG---GCAC- -5'
29723 5' -44.2 NC_006273.1 + 8398 0.69 0.999995
Target:  5'- aGCGCcgaGGGUAgGUgcGUUuuGGCGCCGUGc -3'
miRNA:   3'- -UGCG---CCUAUgUA--UAAuuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 161720 0.69 0.999993
Target:  5'- gAUGCGGAUGCGcaagcgAggGAGACGCUGaUGa -3'
miRNA:   3'- -UGCGCCUAUGUa-----UaaUUUUGUGGC-AC- -5'
29723 5' -44.2 NC_006273.1 + 42329 0.69 0.999993
Target:  5'- uGCGUGGggACAUGUUucuuGggUACCGa- -3'
miRNA:   3'- -UGCGCCuaUGUAUAAu---UuuGUGGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.