Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 5' | -44.2 | NC_006273.1 | + | 210724 | 0.69 | 0.999993 |
Target: 5'- aGCGCGGGUGCcgGUUucgcuGAGCgagaACCGg- -3' miRNA: 3'- -UGCGCCUAUGuaUAAu----UUUG----UGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 161720 | 0.69 | 0.999993 |
Target: 5'- gAUGCGGAUGCGcaagcgAggGAGACGCUGaUGa -3' miRNA: 3'- -UGCGCCUAUGUa-----UaaUUUUGUGGC-AC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 34598 | 0.69 | 0.99999 |
Target: 5'- cCGCGGAUGuCGUAcUUGccguGCGCCGUa -3' miRNA: 3'- uGCGCCUAU-GUAU-AAUuu--UGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 189222 | 0.69 | 0.99999 |
Target: 5'- gGCGUGGAUACGUcggGGAucucgaaucGCGCCGg- -3' miRNA: 3'- -UGCGCCUAUGUAuaaUUU---------UGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 215279 | 0.7 | 0.999988 |
Target: 5'- aGCGUGGAUGCGcccgucaauagGGAACGCUGUa -3' miRNA: 3'- -UGCGCCUAUGUauaa-------UUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 198480 | 0.7 | 0.999987 |
Target: 5'- uCGUGGAcGCGUAc---GGCGCCGUGu -3' miRNA: 3'- uGCGCCUaUGUAUaauuUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 159429 | 0.7 | 0.999982 |
Target: 5'- uUGCGGGUggcgccgagGCuUGUugUAAGGCACCGUGu -3' miRNA: 3'- uGCGCCUA---------UGuAUA--AUUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 218345 | 0.7 | 0.999982 |
Target: 5'- -aGCGGAUGCAagcuaaUAUUAuGACuGCCGUa -3' miRNA: 3'- ugCGCCUAUGU------AUAAUuUUG-UGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 142340 | 0.7 | 0.999982 |
Target: 5'- cGCGCGGAaaguCAggac--AGCGCCGUGg -3' miRNA: 3'- -UGCGCCUau--GUauaauuUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 215692 | 0.7 | 0.999975 |
Target: 5'- cCGCGGAgcgACAUGgcgGcAACGCCGg- -3' miRNA: 3'- uGCGCCUa--UGUAUaa-UuUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 165800 | 0.7 | 0.999966 |
Target: 5'- cCGCgGGGUGCGUGUggcucUGAuGCugCGUGa -3' miRNA: 3'- uGCG-CCUAUGUAUA-----AUUuUGugGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 26842 | 0.71 | 0.999954 |
Target: 5'- aAC-CGGGUACAUGggggGGAACAUCGUc -3' miRNA: 3'- -UGcGCCUAUGUAUaa--UUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 166795 | 0.71 | 0.999954 |
Target: 5'- gAUGCGGGUGCGUAggGuc-CGCgGUGa -3' miRNA: 3'- -UGCGCCUAUGUAUaaUuuuGUGgCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 116486 | 0.71 | 0.999938 |
Target: 5'- cCGCGGG-ACGUAgUGGAGCACUGg- -3' miRNA: 3'- uGCGCCUaUGUAUaAUUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 146328 | 0.71 | 0.999918 |
Target: 5'- aACGCGGGUaGCGUGUUuuuuCGCCGc- -3' miRNA: 3'- -UGCGCCUA-UGUAUAAuuuuGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 44427 | 0.71 | 0.99986 |
Target: 5'- uACGUGGGUAgG----AGGGCACCGUGc -3' miRNA: 3'- -UGCGCCUAUgUauaaUUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 61684 | 0.71 | 0.99986 |
Target: 5'- -aGCGGAgGCGUu---AAAUACCGUGa -3' miRNA: 3'- ugCGCCUaUGUAuaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 25407 | 0.72 | 0.999767 |
Target: 5'- gACGCGGuuuCGUGUUGAAAC-CCGc- -3' miRNA: 3'- -UGCGCCuauGUAUAAUUUUGuGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 14012 | 0.72 | 0.999703 |
Target: 5'- gGCGCGGGgugGCGgagcggGGAGCGCCGa- -3' miRNA: 3'- -UGCGCCUa--UGUauaa--UUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 39473 | 0.72 | 0.999597 |
Target: 5'- gACGCGGA-ACAgcgccaacugcuGGGCACCGUGg -3' miRNA: 3'- -UGCGCCUaUGUauaau-------UUUGUGGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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