miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 1393 0.67 1
Target:  5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3'
miRNA:   3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 2243 0.69 0.999998
Target:  5'- cGCGUGGAUGCcgGccGAGACAUuuaCGUGu -3'
miRNA:   3'- -UGCGCCUAUGuaUaaUUUUGUG---GCAC- -5'
29723 5' -44.2 NC_006273.1 + 5428 0.66 1
Target:  5'- cACGgGGAuuUACGcuauguuguuUAUUGucACGCCGUGu -3'
miRNA:   3'- -UGCgCCU--AUGU----------AUAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 8398 0.69 0.999995
Target:  5'- aGCGCcgaGGGUAgGUgcGUUuuGGCGCCGUGc -3'
miRNA:   3'- -UGCG---CCUAUgUA--UAAuuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 12813 0.69 0.999998
Target:  5'- aGCGUGGAUAU--GUUGuua-ACCGUGg -3'
miRNA:   3'- -UGCGCCUAUGuaUAAUuuugUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 14012 0.72 0.999703
Target:  5'- gGCGCGGGgugGCGgagcggGGAGCGCCGa- -3'
miRNA:   3'- -UGCGCCUa--UGUauaa--UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 15299 0.77 0.987453
Target:  5'- uACGgGGAUcacGCAUgcgagucucAUUAGGACACCGUGu -3'
miRNA:   3'- -UGCgCCUA---UGUA---------UAAUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 17099 0.67 1
Target:  5'- cCGCGGcgACuucgcGGAACGCCGUc -3'
miRNA:   3'- uGCGCCuaUGuauaaUUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 23421 0.67 1
Target:  5'- uAUGCGGGUcuACA-------GCACCGUGg -3'
miRNA:   3'- -UGCGCCUA--UGUauaauuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 25407 0.72 0.999767
Target:  5'- gACGCGGuuuCGUGUUGAAAC-CCGc- -3'
miRNA:   3'- -UGCGCCuauGUAUAAUUUUGuGGCac -5'
29723 5' -44.2 NC_006273.1 + 25429 0.66 1
Target:  5'- cGCGUGGcgcUGCAcaccuauGGCGCCGUGg -3'
miRNA:   3'- -UGCGCCu--AUGUauaauu-UUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 26842 0.71 0.999954
Target:  5'- aAC-CGGGUACAUGggggGGAACAUCGUc -3'
miRNA:   3'- -UGcGCCUAUGUAUaa--UUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 27562 0.68 0.999999
Target:  5'- aACGCGGuuauCGUGUUuu-GCAgCGUGa -3'
miRNA:   3'- -UGCGCCuau-GUAUAAuuuUGUgGCAC- -5'
29723 5' -44.2 NC_006273.1 + 29311 0.67 1
Target:  5'- uACGCGGAU-CGaGUgccGACGCCGgUGg -3'
miRNA:   3'- -UGCGCCUAuGUaUAauuUUGUGGC-AC- -5'
29723 5' -44.2 NC_006273.1 + 34597 0.67 1
Target:  5'- aACGC---UAUAUAUUcaAAAACACCGUGc -3'
miRNA:   3'- -UGCGccuAUGUAUAA--UUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 34598 0.69 0.99999
Target:  5'- cCGCGGAUGuCGUAcUUGccguGCGCCGUa -3'
miRNA:   3'- uGCGCCUAU-GUAU-AAUuu--UGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 35006 0.67 1
Target:  5'- -gGUGGGUACccgGUGUcgc-ACACCGUGg -3'
miRNA:   3'- ugCGCCUAUG---UAUAauuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 37255 0.69 0.999993
Target:  5'- -gGCGGcgACGacgaggAggAAGACGCCGUGg -3'
miRNA:   3'- ugCGCCuaUGUa-----UaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 38015 0.66 1
Target:  5'- cGCGCGGGUGCAgg-UGcAGCGCg--- -3'
miRNA:   3'- -UGCGCCUAUGUauaAUuUUGUGgcac -5'
29723 5' -44.2 NC_006273.1 + 39263 0.66 1
Target:  5'- gGCGCGGcccGUGC-UGUUggccaGAAACGCCGc- -3'
miRNA:   3'- -UGCGCC---UAUGuAUAA-----UUUUGUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.