Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 5' | -44.2 | NC_006273.1 | + | 39435 | 0.68 | 1 |
Target: 5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3' miRNA: 3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 39473 | 0.72 | 0.999597 |
Target: 5'- gACGCGGA-ACAgcgccaacugcuGGGCACCGUGg -3' miRNA: 3'- -UGCGCCUaUGUauaau-------UUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 39601 | 0.67 | 1 |
Target: 5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3' miRNA: 3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 42329 | 0.69 | 0.999993 |
Target: 5'- uGCGUGGggACAUGUUucuuGggUACCGa- -3' miRNA: 3'- -UGCGCCuaUGUAUAAu---UuuGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 43443 | 0.66 | 1 |
Target: 5'- -gGCGGAUACGcgGUUuucacccGGGCGCCGcUGa -3' miRNA: 3'- ugCGCCUAUGUa-UAAu------UUUGUGGC-AC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 44427 | 0.71 | 0.99986 |
Target: 5'- uACGUGGGUAgG----AGGGCACCGUGc -3' miRNA: 3'- -UGCGCCUAUgUauaaUUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 51073 | 0.66 | 1 |
Target: 5'- cCGUGGuacGUACAUcgaacaGAAACACCGUa -3' miRNA: 3'- uGCGCC---UAUGUAuaa---UUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 53033 | 0.67 | 1 |
Target: 5'- gUGUGGGUcucACGUcgucUUGAAACACCGUc -3' miRNA: 3'- uGCGCCUA---UGUAu---AAUUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 57083 | 0.68 | 0.999999 |
Target: 5'- cACGuuGAUacGCAUGUUuuucACGCCGUGg -3' miRNA: 3'- -UGCgcCUA--UGUAUAAuuu-UGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 59210 | 0.66 | 1 |
Target: 5'- cACGCGGAUagcggccacgucccACAUGUccacAAACACaCGUa -3' miRNA: 3'- -UGCGCCUA--------------UGUAUAau--UUUGUG-GCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 61684 | 0.71 | 0.99986 |
Target: 5'- -aGCGGAgGCGUu---AAAUACCGUGa -3' miRNA: 3'- ugCGCCUaUGUAuaauUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 61721 | 0.67 | 1 |
Target: 5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3' miRNA: 3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 62187 | 0.77 | 0.987453 |
Target: 5'- gGCGCGGcccUACGUcaAUUGucGCGCCGUGg -3' miRNA: 3'- -UGCGCCu--AUGUA--UAAUuuUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 70949 | 0.66 | 1 |
Target: 5'- gACGCGGcGUGCugcugcucAAUACCGUGu -3' miRNA: 3'- -UGCGCC-UAUGuauaauu-UUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 71609 | 0.67 | 1 |
Target: 5'- gGCGCGGuguuagACAUG---GGGCagGCCGUGg -3' miRNA: 3'- -UGCGCCua----UGUAUaauUUUG--UGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 72147 | 0.67 | 1 |
Target: 5'- aACGCGGAcUGCGaggaggcUGAGGCGCCGc- -3' miRNA: 3'- -UGCGCCU-AUGUaua----AUUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 72841 | 0.66 | 1 |
Target: 5'- uACGgGGGgcucACAguccacucggAAAGCACCGUGa -3' miRNA: 3'- -UGCgCCUa---UGUauaa------UUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 80097 | 0.69 | 0.999998 |
Target: 5'- uCGCGGAagguagugUACAUGU----GCACCGUc -3' miRNA: 3'- uGCGCCU--------AUGUAUAauuuUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 89275 | 0.68 | 0.999999 |
Target: 5'- uGCGCGacgACGUggUGGAgaacGCGCCGUGa -3' miRNA: 3'- -UGCGCcuaUGUAuaAUUU----UGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 93442 | 0.68 | 1 |
Target: 5'- cAUGCGGAaaaagucGCGUGUccAAGCACgGUGg -3' miRNA: 3'- -UGCGCCUa------UGUAUAauUUUGUGgCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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