miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 98584 0.66 1
Target:  5'- uCGCGGAgACGc---GAGACACCGg- -3'
miRNA:   3'- uGCGCCUaUGUauaaUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 100831 0.66 1
Target:  5'- aACGUGGucucuUACGUGUgcgaAGAGCACCu-- -3'
miRNA:   3'- -UGCGCCu----AUGUAUAa---UUUUGUGGcac -5'
29723 5' -44.2 NC_006273.1 + 104163 0.67 1
Target:  5'- aGCGCGGccuuCAUAUUGAuAACGCgGUu -3'
miRNA:   3'- -UGCGCCuau-GUAUAAUU-UUGUGgCAc -5'
29723 5' -44.2 NC_006273.1 + 115957 0.67 1
Target:  5'- aGCGCGGGUgACAUA----GGCGCUGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 116486 0.71 0.999938
Target:  5'- cCGCGGG-ACGUAgUGGAGCACUGg- -3'
miRNA:   3'- uGCGCCUaUGUAUaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 117165 0.66 1
Target:  5'- -gGCGGcGUGCGUuAUUAAAGCGgCGUc -3'
miRNA:   3'- ugCGCC-UAUGUA-UAAUUUUGUgGCAc -5'
29723 5' -44.2 NC_006273.1 + 117761 0.66 1
Target:  5'- cACGCGGggGCGccgUAGGACGCgGg- -3'
miRNA:   3'- -UGCGCCuaUGUauaAUUUUGUGgCac -5'
29723 5' -44.2 NC_006273.1 + 123811 0.67 1
Target:  5'- uCGCGGggGCGguUUGAGACucGCCGUu -3'
miRNA:   3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 127207 0.8 0.940144
Target:  5'- aACGCGG-UACGUcc-GAAACGCCGUGg -3'
miRNA:   3'- -UGCGCCuAUGUAuaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 129730 0.66 1
Target:  5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3'
miRNA:   3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 132710 0.67 1
Target:  5'- gGCGCGacgguGAUGCGaGUggugAGAGCGCCGg- -3'
miRNA:   3'- -UGCGC-----CUAUGUaUAa---UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 142340 0.7 0.999982
Target:  5'- cGCGCGGAaaguCAggac--AGCGCCGUGg -3'
miRNA:   3'- -UGCGCCUau--GUauaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 146328 0.71 0.999918
Target:  5'- aACGCGGGUaGCGUGUUuuuuCGCCGc- -3'
miRNA:   3'- -UGCGCCUA-UGUAUAAuuuuGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 147951 0.67 1
Target:  5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3'
miRNA:   3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 150273 0.66 1
Target:  5'- gAUGUGGAUGCAcGUgcgGGAGC-UCGUGc -3'
miRNA:   3'- -UGCGCCUAUGUaUAa--UUUUGuGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 159429 0.7 0.999982
Target:  5'- uUGCGGGUggcgccgagGCuUGUugUAAGGCACCGUGu -3'
miRNA:   3'- uGCGCCUA---------UGuAUA--AUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 161720 0.69 0.999993
Target:  5'- gAUGCGGAUGCGcaagcgAggGAGACGCUGaUGa -3'
miRNA:   3'- -UGCGCCUAUGUa-----UaaUUUUGUGGC-AC- -5'
29723 5' -44.2 NC_006273.1 + 162193 0.66 1
Target:  5'- -gGCGGAgGCGgugGUUGcgGCGCCGc- -3'
miRNA:   3'- ugCGCCUaUGUa--UAAUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 165109 0.75 0.996075
Target:  5'- cACGCGGAU-CAUc-UGAAGCACCGg- -3'
miRNA:   3'- -UGCGCCUAuGUAuaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 165800 0.7 0.999966
Target:  5'- cCGCgGGGUGCGUGUggcucUGAuGCugCGUGa -3'
miRNA:   3'- uGCG-CCUAUGUAUA-----AUUuUGugGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.