miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 234494 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 234328 0.68 1
Target:  5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3'
miRNA:   3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 234156 0.66 1
Target:  5'- gGCGCGGcccGUGC-UGUUggccaGAAACGCCGc- -3'
miRNA:   3'- -UGCGCC---UAUGuAUAA-----UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 232908 0.66 1
Target:  5'- cGCGCGGGUGCAgg-UGcAGCGCg--- -3'
miRNA:   3'- -UGCGCCUAUGUauaAUuUUGUGgcac -5'
29723 5' -44.2 NC_006273.1 + 226806 1.09 0.061282
Target:  5'- cACGCGGAUACAUAUUAAAACACCGUGu -3'
miRNA:   3'- -UGCGCCUAUGUAUAAUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 218345 0.7 0.999982
Target:  5'- -aGCGGAUGCAagcuaaUAUUAuGACuGCCGUa -3'
miRNA:   3'- ugCGCCUAUGU------AUAAUuUUG-UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 215692 0.7 0.999975
Target:  5'- cCGCGGAgcgACAUGgcgGcAACGCCGg- -3'
miRNA:   3'- uGCGCCUa--UGUAUaa-UuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 215279 0.7 0.999988
Target:  5'- aGCGUGGAUGCGcccgucaauagGGAACGCUGUa -3'
miRNA:   3'- -UGCGCCUAUGUauaa-------UUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 214735 0.67 1
Target:  5'- gACGUGGuuccuCGUucugccGGAGCACCGUGg -3'
miRNA:   3'- -UGCGCCuau--GUAuaa---UUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 210724 0.69 0.999993
Target:  5'- aGCGCGGGUGCcgGUUucgcuGAGCgagaACCGg- -3'
miRNA:   3'- -UGCGCCUAUGuaUAAu----UUUG----UGGCac -5'
29723 5' -44.2 NC_006273.1 + 204757 0.67 1
Target:  5'- gUGCGGGaGCc----GAAACACCGUGc -3'
miRNA:   3'- uGCGCCUaUGuauaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 203800 0.67 1
Target:  5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3'
miRNA:   3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 202265 0.8 0.953842
Target:  5'- cCGCGGcgGCGcGUUAuAAGCACCGUGg -3'
miRNA:   3'- uGCGCCuaUGUaUAAU-UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 199802 0.67 1
Target:  5'- uACGUGGAUGagAUcgUAGAGgGCgCGUGg -3'
miRNA:   3'- -UGCGCCUAUg-UAuaAUUUUgUG-GCAC- -5'
29723 5' -44.2 NC_006273.1 + 198969 0.67 1
Target:  5'- cUGCGGcgACAc----GGGCACCGUGu -3'
miRNA:   3'- uGCGCCuaUGUauaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 198480 0.7 0.999987
Target:  5'- uCGUGGAcGCGUAc---GGCGCCGUGu -3'
miRNA:   3'- uGCGCCUaUGUAUaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 197762 0.74 0.998035
Target:  5'- cGCGCGGGUcGCGUGUUGAcgGAC-CCGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUAAUU--UUGuGGCac -5'
29723 5' -44.2 NC_006273.1 + 196286 0.67 1
Target:  5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3'
miRNA:   3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 195846 0.75 0.997195
Target:  5'- gGCGCGcg-GCAUGUUGc-GCGCCGUGa -3'
miRNA:   3'- -UGCGCcuaUGUAUAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 195689 0.67 1
Target:  5'- -aGUGGAUAuCGUAaggcgcguGCACCGUGa -3'
miRNA:   3'- ugCGCCUAU-GUAUaauuu---UGUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.