Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29723 | 5' | -44.2 | NC_006273.1 | + | 195409 | 0.73 | 0.999268 |
Target: 5'- -gGCGGcGUGCAUcugccGAAACACCGUGu -3' miRNA: 3'- ugCGCC-UAUGUAuaa--UUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 192144 | 0.66 | 1 |
Target: 5'- -gGCGGcUACAgcuccAAGCGCCGUa -3' miRNA: 3'- ugCGCCuAUGUauaauUUUGUGGCAc -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 189222 | 0.69 | 0.99999 |
Target: 5'- gGCGUGGAUACGUcggGGAucucgaaucGCGCCGg- -3' miRNA: 3'- -UGCGCCUAUGUAuaaUUU---------UGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 183104 | 0.66 | 1 |
Target: 5'- -aGUGGAUaacaGCAUGUUAuucGC-CCGUGa -3' miRNA: 3'- ugCGCCUA----UGUAUAAUuu-UGuGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 178999 | 0.67 | 1 |
Target: 5'- gGCGCGGucccGCgAUGgagAAAACGCCGg- -3' miRNA: 3'- -UGCGCCua--UG-UAUaa-UUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 177545 | 0.67 | 1 |
Target: 5'- gGCGCGGc--UGUAUUAuuAGACGCCGg- -3' miRNA: 3'- -UGCGCCuauGUAUAAU--UUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 171545 | 0.68 | 1 |
Target: 5'- -aGCGGGUGCGUGggAGAggucacucGCGgCGUGc -3' miRNA: 3'- ugCGCCUAUGUAUaaUUU--------UGUgGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 171057 | 0.74 | 0.998369 |
Target: 5'- cAUGCGGAgucGCGgcgGUUGGGGCGCCGa- -3' miRNA: 3'- -UGCGCCUa--UGUa--UAAUUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 167543 | 0.66 | 1 |
Target: 5'- gUGCGGGUgacagcgccgcucuACAUcacccGUUAGcACGCCGUGc -3' miRNA: 3'- uGCGCCUA--------------UGUA-----UAAUUuUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 166795 | 0.71 | 0.999954 |
Target: 5'- gAUGCGGGUGCGUAggGuc-CGCgGUGa -3' miRNA: 3'- -UGCGCCUAUGUAUaaUuuuGUGgCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 165800 | 0.7 | 0.999966 |
Target: 5'- cCGCgGGGUGCGUGUggcucUGAuGCugCGUGa -3' miRNA: 3'- uGCG-CCUAUGUAUA-----AUUuUGugGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 165109 | 0.75 | 0.996075 |
Target: 5'- cACGCGGAU-CAUc-UGAAGCACCGg- -3' miRNA: 3'- -UGCGCCUAuGUAuaAUUUUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 162193 | 0.66 | 1 |
Target: 5'- -gGCGGAgGCGgugGUUGcgGCGCCGc- -3' miRNA: 3'- ugCGCCUaUGUa--UAAUuuUGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 161720 | 0.69 | 0.999993 |
Target: 5'- gAUGCGGAUGCGcaagcgAggGAGACGCUGaUGa -3' miRNA: 3'- -UGCGCCUAUGUa-----UaaUUUUGUGGC-AC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 159429 | 0.7 | 0.999982 |
Target: 5'- uUGCGGGUggcgccgagGCuUGUugUAAGGCACCGUGu -3' miRNA: 3'- uGCGCCUA---------UGuAUA--AUUUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 150273 | 0.66 | 1 |
Target: 5'- gAUGUGGAUGCAcGUgcgGGAGC-UCGUGc -3' miRNA: 3'- -UGCGCCUAUGUaUAa--UUUUGuGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 147951 | 0.67 | 1 |
Target: 5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3' miRNA: 3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 146328 | 0.71 | 0.999918 |
Target: 5'- aACGCGGGUaGCGUGUUuuuuCGCCGc- -3' miRNA: 3'- -UGCGCCUA-UGUAUAAuuuuGUGGCac -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 142340 | 0.7 | 0.999982 |
Target: 5'- cGCGCGGAaaguCAggac--AGCGCCGUGg -3' miRNA: 3'- -UGCGCCUau--GUauaauuUUGUGGCAC- -5' |
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29723 | 5' | -44.2 | NC_006273.1 | + | 132710 | 0.67 | 1 |
Target: 5'- gGCGCGacgguGAUGCGaGUggugAGAGCGCCGg- -3' miRNA: 3'- -UGCGC-----CUAUGUaUAa---UUUUGUGGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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