miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 129730 0.66 1
Target:  5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3'
miRNA:   3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 127207 0.8 0.940144
Target:  5'- aACGCGG-UACGUcc-GAAACGCCGUGg -3'
miRNA:   3'- -UGCGCCuAUGUAuaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 123811 0.67 1
Target:  5'- uCGCGGggGCGguUUGAGACucGCCGUu -3'
miRNA:   3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 117761 0.66 1
Target:  5'- cACGCGGggGCGccgUAGGACGCgGg- -3'
miRNA:   3'- -UGCGCCuaUGUauaAUUUUGUGgCac -5'
29723 5' -44.2 NC_006273.1 + 117165 0.66 1
Target:  5'- -gGCGGcGUGCGUuAUUAAAGCGgCGUc -3'
miRNA:   3'- ugCGCC-UAUGUA-UAAUUUUGUgGCAc -5'
29723 5' -44.2 NC_006273.1 + 116486 0.71 0.999938
Target:  5'- cCGCGGG-ACGUAgUGGAGCACUGg- -3'
miRNA:   3'- uGCGCCUaUGUAUaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 115957 0.67 1
Target:  5'- aGCGCGGGUgACAUA----GGCGCUGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 104163 0.67 1
Target:  5'- aGCGCGGccuuCAUAUUGAuAACGCgGUu -3'
miRNA:   3'- -UGCGCCuau-GUAUAAUU-UUGUGgCAc -5'
29723 5' -44.2 NC_006273.1 + 100831 0.66 1
Target:  5'- aACGUGGucucuUACGUGUgcgaAGAGCACCu-- -3'
miRNA:   3'- -UGCGCCu----AUGUAUAa---UUUUGUGGcac -5'
29723 5' -44.2 NC_006273.1 + 98584 0.66 1
Target:  5'- uCGCGGAgACGc---GAGACACCGg- -3'
miRNA:   3'- uGCGCCUaUGUauaaUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 93442 0.68 1
Target:  5'- cAUGCGGAaaaagucGCGUGUccAAGCACgGUGg -3'
miRNA:   3'- -UGCGCCUa------UGUAUAauUUUGUGgCAC- -5'
29723 5' -44.2 NC_006273.1 + 89275 0.68 0.999999
Target:  5'- uGCGCGacgACGUggUGGAgaacGCGCCGUGa -3'
miRNA:   3'- -UGCGCcuaUGUAuaAUUU----UGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 80097 0.69 0.999998
Target:  5'- uCGCGGAagguagugUACAUGU----GCACCGUc -3'
miRNA:   3'- uGCGCCU--------AUGUAUAauuuUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 72841 0.66 1
Target:  5'- uACGgGGGgcucACAguccacucggAAAGCACCGUGa -3'
miRNA:   3'- -UGCgCCUa---UGUauaa------UUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 72147 0.67 1
Target:  5'- aACGCGGAcUGCGaggaggcUGAGGCGCCGc- -3'
miRNA:   3'- -UGCGCCU-AUGUaua----AUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 71609 0.67 1
Target:  5'- gGCGCGGuguuagACAUG---GGGCagGCCGUGg -3'
miRNA:   3'- -UGCGCCua----UGUAUaauUUUG--UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 70949 0.66 1
Target:  5'- gACGCGGcGUGCugcugcucAAUACCGUGu -3'
miRNA:   3'- -UGCGCC-UAUGuauaauu-UUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 62187 0.77 0.987453
Target:  5'- gGCGCGGcccUACGUcaAUUGucGCGCCGUGg -3'
miRNA:   3'- -UGCGCCu--AUGUA--UAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 61721 0.67 1
Target:  5'- gGCGCGGuggaugcccaggACGUGaccgcGAGCGCCGUGc -3'
miRNA:   3'- -UGCGCCua----------UGUAUaau--UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 61684 0.71 0.99986
Target:  5'- -aGCGGAgGCGUu---AAAUACCGUGa -3'
miRNA:   3'- ugCGCCUaUGUAuaauUUUGUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.