miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 234328 0.68 1
Target:  5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3'
miRNA:   3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 34598 0.69 0.99999
Target:  5'- cCGCGGAUGuCGUAcUUGccguGCGCCGUa -3'
miRNA:   3'- uGCGCCUAU-GUAU-AAUuu--UGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 37255 0.69 0.999993
Target:  5'- -gGCGGcgACGacgaggAggAAGACGCCGUGg -3'
miRNA:   3'- ugCGCCuaUGUa-----UaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 42329 0.69 0.999993
Target:  5'- uGCGUGGggACAUGUUucuuGggUACCGa- -3'
miRNA:   3'- -UGCGCCuaUGUAUAAu---UuuGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 210724 0.69 0.999993
Target:  5'- aGCGCGGGUGCcgGUUucgcuGAGCgagaACCGg- -3'
miRNA:   3'- -UGCGCCUAUGuaUAAu----UUUG----UGGCac -5'
29723 5' -44.2 NC_006273.1 + 2243 0.69 0.999998
Target:  5'- cGCGUGGAUGCcgGccGAGACAUuuaCGUGu -3'
miRNA:   3'- -UGCGCCUAUGuaUaaUUUUGUG---GCAC- -5'
29723 5' -44.2 NC_006273.1 + 57083 0.68 0.999999
Target:  5'- cACGuuGAUacGCAUGUUuuucACGCCGUGg -3'
miRNA:   3'- -UGCgcCUA--UGUAUAAuuu-UGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 27562 0.68 0.999999
Target:  5'- aACGCGGuuauCGUGUUuu-GCAgCGUGa -3'
miRNA:   3'- -UGCGCCuau-GUAUAAuuuUGUgGCAC- -5'
29723 5' -44.2 NC_006273.1 + 89275 0.68 0.999999
Target:  5'- uGCGCGacgACGUggUGGAgaacGCGCCGUGa -3'
miRNA:   3'- -UGCGCcuaUGUAuaAUUU----UGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 189222 0.69 0.99999
Target:  5'- gGCGUGGAUACGUcggGGAucucgaaucGCGCCGg- -3'
miRNA:   3'- -UGCGCCUAUGUAuaaUUU---------UGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 215279 0.7 0.999988
Target:  5'- aGCGUGGAUGCGcccgucaauagGGAACGCUGUa -3'
miRNA:   3'- -UGCGCCUAUGUauaa-------UUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 142340 0.7 0.999982
Target:  5'- cGCGCGGAaaguCAggac--AGCGCCGUGg -3'
miRNA:   3'- -UGCGCCUau--GUauaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 15299 0.77 0.987453
Target:  5'- uACGgGGAUcacGCAUgcgagucucAUUAGGACACCGUGu -3'
miRNA:   3'- -UGCgCCUA---UGUA---------UAAUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 62187 0.77 0.987453
Target:  5'- gGCGCGGcccUACGUcaAUUGucGCGCCGUGg -3'
miRNA:   3'- -UGCGCCu--AUGUA--UAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 39473 0.72 0.999597
Target:  5'- gACGCGGA-ACAgcgccaacugcuGGGCACCGUGg -3'
miRNA:   3'- -UGCGCCUaUGUauaau-------UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 25407 0.72 0.999767
Target:  5'- gACGCGGuuuCGUGUUGAAAC-CCGc- -3'
miRNA:   3'- -UGCGCCuauGUAUAAUUUUGuGGCac -5'
29723 5' -44.2 NC_006273.1 + 61684 0.71 0.99986
Target:  5'- -aGCGGAgGCGUu---AAAUACCGUGa -3'
miRNA:   3'- ugCGCCUaUGUAuaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 116486 0.71 0.999938
Target:  5'- cCGCGGG-ACGUAgUGGAGCACUGg- -3'
miRNA:   3'- uGCGCCUaUGUAUaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 26842 0.71 0.999954
Target:  5'- aAC-CGGGUACAUGggggGGAACAUCGUc -3'
miRNA:   3'- -UGcGCCUAUGUAUaa--UUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 215692 0.7 0.999975
Target:  5'- cCGCGGAgcgACAUGgcgGcAACGCCGg- -3'
miRNA:   3'- uGCGCCUa--UGUAUaa-UuUUGUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.