miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 39601 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 39435 0.68 1
Target:  5'- cCGCGGGguucUACccggu-GGACGCCGUGg -3'
miRNA:   3'- uGCGCCU----AUGuauaauUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 166795 0.71 0.999954
Target:  5'- gAUGCGGGUGCGUAggGuc-CGCgGUGa -3'
miRNA:   3'- -UGCGCCUAUGUAUaaUuuuGUGgCAC- -5'
29723 5' -44.2 NC_006273.1 + 195846 0.75 0.997195
Target:  5'- gGCGCGcg-GCAUGUUGc-GCGCCGUGa -3'
miRNA:   3'- -UGCGCcuaUGUAUAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 104163 0.67 1
Target:  5'- aGCGCGGccuuCAUAUUGAuAACGCgGUu -3'
miRNA:   3'- -UGCGCCuau-GUAUAAUU-UUGUGgCAc -5'
29723 5' -44.2 NC_006273.1 + 72147 0.67 1
Target:  5'- aACGCGGAcUGCGaggaggcUGAGGCGCCGc- -3'
miRNA:   3'- -UGCGCCU-AUGUaua----AUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 80097 0.69 0.999998
Target:  5'- uCGCGGAagguagugUACAUGU----GCACCGUc -3'
miRNA:   3'- uGCGCCU--------AUGUAUAauuuUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 165109 0.75 0.996075
Target:  5'- cACGCGGAU-CAUc-UGAAGCACCGg- -3'
miRNA:   3'- -UGCGCCUAuGUAuaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 195689 0.67 1
Target:  5'- -aGUGGAUAuCGUAaggcgcguGCACCGUGa -3'
miRNA:   3'- ugCGCCUAU-GUAUaauuu---UGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 202265 0.8 0.953842
Target:  5'- cCGCGGcgGCGcGUUAuAAGCACCGUGg -3'
miRNA:   3'- uGCGCCuaUGUaUAAU-UUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 12813 0.69 0.999998
Target:  5'- aGCGUGGAUAU--GUUGuua-ACCGUGg -3'
miRNA:   3'- -UGCGCCUAUGuaUAAUuuugUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 199802 0.67 1
Target:  5'- uACGUGGAUGagAUcgUAGAGgGCgCGUGg -3'
miRNA:   3'- -UGCGCCUAUg-UAuaAUUUUgUG-GCAC- -5'
29723 5' -44.2 NC_006273.1 + 198480 0.7 0.999987
Target:  5'- uCGUGGAcGCGUAc---GGCGCCGUGu -3'
miRNA:   3'- uGCGCCUaUGUAUaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 165800 0.7 0.999966
Target:  5'- cCGCgGGGUGCGUGUggcucUGAuGCugCGUGa -3'
miRNA:   3'- uGCG-CCUAUGUAUA-----AUUuUGugGCAC- -5'
29723 5' -44.2 NC_006273.1 + 14012 0.72 0.999703
Target:  5'- gGCGCGGGgugGCGgagcggGGAGCGCCGa- -3'
miRNA:   3'- -UGCGCCUa--UGUauaa--UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 197762 0.74 0.998035
Target:  5'- cGCGCGGGUcGCGUGUUGAcgGAC-CCGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUAAUU--UUGuGGCac -5'
29723 5' -44.2 NC_006273.1 + 5428 0.66 1
Target:  5'- cACGgGGAuuUACGcuauguuguuUAUUGucACGCCGUGu -3'
miRNA:   3'- -UGCgCCU--AUGU----------AUAAUuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 178999 0.67 1
Target:  5'- gGCGCGGucccGCgAUGgagAAAACGCCGg- -3'
miRNA:   3'- -UGCGCCua--UG-UAUaa-UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 1393 0.67 1
Target:  5'- cGCGUGGAU-CGUGcugguGGCgACCGUGg -3'
miRNA:   3'- -UGCGCCUAuGUAUaauu-UUG-UGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 35006 0.67 1
Target:  5'- -gGUGGGUACccgGUGUcgc-ACACCGUGg -3'
miRNA:   3'- ugCGCCUAUG---UAUAauuuUGUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.