miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29723 5' -44.2 NC_006273.1 + 93442 0.68 1
Target:  5'- cAUGCGGAaaaagucGCGUGUccAAGCACgGUGg -3'
miRNA:   3'- -UGCGCCUa------UGUAUAauUUUGUGgCAC- -5'
29723 5' -44.2 NC_006273.1 + 167543 0.66 1
Target:  5'- gUGCGGGUgacagcgccgcucuACAUcacccGUUAGcACGCCGUGc -3'
miRNA:   3'- uGCGCCUA--------------UGUA-----UAAUUuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 23421 0.67 1
Target:  5'- uAUGCGGGUcuACA-------GCACCGUGg -3'
miRNA:   3'- -UGCGCCUA--UGUauaauuuUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 98584 0.66 1
Target:  5'- uCGCGGAgACGc---GAGACACCGg- -3'
miRNA:   3'- uGCGCCUaUGUauaaUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 129730 0.66 1
Target:  5'- cACGCGGAggaaGCAaggccgc-CGCCGUGg -3'
miRNA:   3'- -UGCGCCUa---UGUauaauuuuGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 104163 0.67 1
Target:  5'- aGCGCGGccuuCAUAUUGAuAACGCgGUu -3'
miRNA:   3'- -UGCGCCuau-GUAUAAUU-UUGUGgCAc -5'
29723 5' -44.2 NC_006273.1 + 117761 0.66 1
Target:  5'- cACGCGGggGCGccgUAGGACGCgGg- -3'
miRNA:   3'- -UGCGCCuaUGUauaAUUUUGUGgCac -5'
29723 5' -44.2 NC_006273.1 + 25429 0.66 1
Target:  5'- cGCGUGGcgcUGCAcaccuauGGCGCCGUGg -3'
miRNA:   3'- -UGCGCCu--AUGUauaauu-UUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 132710 0.67 1
Target:  5'- gGCGCGacgguGAUGCGaGUggugAGAGCGCCGg- -3'
miRNA:   3'- -UGCGC-----CUAUGUaUAa---UUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 116486 0.71 0.999938
Target:  5'- cCGCGGG-ACGUAgUGGAGCACUGg- -3'
miRNA:   3'- uGCGCCUaUGUAUaAUUUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 189222 0.69 0.99999
Target:  5'- gGCGUGGAUACGUcggGGAucucgaaucGCGCCGg- -3'
miRNA:   3'- -UGCGCCUAUGUAuaaUUU---------UGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 147951 0.67 1
Target:  5'- gGCGCGGccuagaGCAgcgu--AGCGCCGUGu -3'
miRNA:   3'- -UGCGCCua----UGUauaauuUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 53033 0.67 1
Target:  5'- gUGUGGGUcucACGUcgucUUGAAACACCGUc -3'
miRNA:   3'- uGCGCCUA---UGUAu---AAUUUUGUGGCAc -5'
29723 5' -44.2 NC_006273.1 + 203800 0.67 1
Target:  5'- -gGCGGAgccACAUAguucgguuCACCGUGu -3'
miRNA:   3'- ugCGCCUa--UGUAUaauuuu--GUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 123811 0.67 1
Target:  5'- uCGCGGggGCGguUUGAGACucGCCGUu -3'
miRNA:   3'- uGCGCCuaUGUauAAUUUUG--UGGCAc -5'
29723 5' -44.2 NC_006273.1 + 234494 0.67 1
Target:  5'- gGCGCGGcgACAUGccGuuGCGCUGg- -3'
miRNA:   3'- -UGCGCCuaUGUAUaaUuuUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 115957 0.67 1
Target:  5'- aGCGCGGGUgACAUA----GGCGCUGg- -3'
miRNA:   3'- -UGCGCCUA-UGUAUaauuUUGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 42329 0.69 0.999993
Target:  5'- uGCGUGGggACAUGUUucuuGggUACCGa- -3'
miRNA:   3'- -UGCGCCuaUGUAUAAu---UuuGUGGCac -5'
29723 5' -44.2 NC_006273.1 + 37255 0.69 0.999993
Target:  5'- -gGCGGcgACGacgaggAggAAGACGCCGUGg -3'
miRNA:   3'- ugCGCCuaUGUa-----UaaUUUUGUGGCAC- -5'
29723 5' -44.2 NC_006273.1 + 34598 0.69 0.99999
Target:  5'- cCGCGGAUGuCGUAcUUGccguGCGCCGUa -3'
miRNA:   3'- uGCGCCUAU-GUAU-AAUuu--UGUGGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.