miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29725 3' -44.9 NC_006273.1 + 43239 0.66 1
Target:  5'- cGGCUACGGcGCUuggaGCUGUag-CCGccUGGg -3'
miRNA:   3'- -CCGAUGUUuUGA----UGGCAaaaGGC--ACC- -5'
29725 3' -44.9 NC_006273.1 + 198370 0.67 1
Target:  5'- uGCUGCGAAGC--CCGUUcUUCCGa-- -3'
miRNA:   3'- cCGAUGUUUUGauGGCAA-AAGGCacc -5'
29725 3' -44.9 NC_006273.1 + 101704 0.67 1
Target:  5'- cGCUGCcggGGGGCgggucACCGgcg-CCGUGGa -3'
miRNA:   3'- cCGAUG---UUUUGa----UGGCaaaaGGCACC- -5'
29725 3' -44.9 NC_006273.1 + 186010 0.66 1
Target:  5'- gGGUcgGCAGGgcacuaccgccGCUGCCGUUUUuugcgCCGUGcGg -3'
miRNA:   3'- -CCGa-UGUUU-----------UGAUGGCAAAA-----GGCAC-C- -5'
29725 3' -44.9 NC_006273.1 + 210889 0.66 1
Target:  5'- aGCUACccAAGACgGCCaccg-CCGUGGa -3'
miRNA:   3'- cCGAUG--UUUUGaUGGcaaaaGGCACC- -5'
29725 3' -44.9 NC_006273.1 + 189989 0.66 1
Target:  5'- gGGCUGCAGGcggcagcggauACUgGCCGUgacuugcuggaUCuCGUGGg -3'
miRNA:   3'- -CCGAUGUUU-----------UGA-UGGCAaa---------AG-GCACC- -5'
29725 3' -44.9 NC_006273.1 + 154551 0.67 1
Target:  5'- uGCUACGAGACggggggaaacACCG----CCGUGGa -3'
miRNA:   3'- cCGAUGUUUUGa---------UGGCaaaaGGCACC- -5'
29725 3' -44.9 NC_006273.1 + 24662 0.67 1
Target:  5'- cGCUcaGCGAAaccggcacccgcGCUGCCGUcgUCCGUu- -3'
miRNA:   3'- cCGA--UGUUU------------UGAUGGCAaaAGGCAcc -5'
29725 3' -44.9 NC_006273.1 + 125004 0.67 1
Target:  5'- -aCUACGuaacAGCUuucACCGUUacgCCGUGGa -3'
miRNA:   3'- ccGAUGUu---UUGA---UGGCAAaa-GGCACC- -5'
29725 3' -44.9 NC_006273.1 + 211094 0.67 1
Target:  5'- aGGCUAUAuGACcGCgCGUcUaagacgcgagaUCCGUGGg -3'
miRNA:   3'- -CCGAUGUuUUGaUG-GCAaA-----------AGGCACC- -5'
29725 3' -44.9 NC_006273.1 + 6262 0.66 1
Target:  5'- cGGCgGCGAAACaaccagcGCCGggUaCUGUGGc -3'
miRNA:   3'- -CCGaUGUUUUGa------UGGCaaAaGGCACC- -5'
29725 3' -44.9 NC_006273.1 + 106485 0.66 1
Target:  5'- uGCUacGCAAGGCgccGCCGUacUuuGUGGu -3'
miRNA:   3'- cCGA--UGUUUUGa--UGGCAaaAggCACC- -5'
29725 3' -44.9 NC_006273.1 + 97214 0.66 1
Target:  5'- aGCUGCAAcccgcCUGCCcgcaggCCGUGGc -3'
miRNA:   3'- cCGAUGUUuu---GAUGGcaaaa-GGCACC- -5'
29725 3' -44.9 NC_006273.1 + 131632 0.66 1
Target:  5'- cGGUUGCucGAgUACCGg---CgCGUGGu -3'
miRNA:   3'- -CCGAUGuuUUgAUGGCaaaaG-GCACC- -5'
29725 3' -44.9 NC_006273.1 + 166013 0.66 1
Target:  5'- aGGCUACG---UUGCCGUaaUCgGUGa -3'
miRNA:   3'- -CCGAUGUuuuGAUGGCAaaAGgCACc -5'
29725 3' -44.9 NC_006273.1 + 64760 0.67 1
Target:  5'- -uCUACGAGACgGCCGcgaaggccuacgCCGUGGg -3'
miRNA:   3'- ccGAUGUUUUGaUGGCaaaa--------GGCACC- -5'
29725 3' -44.9 NC_006273.1 + 105514 0.67 1
Target:  5'- cGGCccgcgACAAAACUGCgucguagguaccagaUGUUcaCCGUGGc -3'
miRNA:   3'- -CCGa----UGUUUUGAUG---------------GCAAaaGGCACC- -5'
29725 3' -44.9 NC_006273.1 + 29374 0.67 0.999999
Target:  5'- uGGCUcCGGGACUAUCGUgUUCCc--- -3'
miRNA:   3'- -CCGAuGUUUUGAUGGCAaAAGGcacc -5'
29725 3' -44.9 NC_006273.1 + 108550 0.67 0.999999
Target:  5'- uGCUGCAggccugucguGAACUguuuuugGCCGUgcaaUUCGUGGg -3'
miRNA:   3'- cCGAUGU----------UUUGA-------UGGCAaa--AGGCACC- -5'
29725 3' -44.9 NC_006273.1 + 145317 0.67 0.999999
Target:  5'- gGGCUGCGccGCgggGCUGUgcgaggcCUGUGGg -3'
miRNA:   3'- -CCGAUGUuuUGa--UGGCAaaa----GGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.