miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29725 5' -56.1 NC_006273.1 + 80291 0.66 0.961107
Target:  5'- uUCCAucCGUugagauacCGGCACGCUCUG--GCCGc -3'
miRNA:   3'- cAGGU--GCA--------GUCGUGCGAGACacUGGC- -5'
29725 5' -56.1 NC_006273.1 + 207061 0.66 0.957592
Target:  5'- -gCCAacaaUCAGCACGUUUgcaucGUGGCCGa -3'
miRNA:   3'- caGGUgc--AGUCGUGCGAGa----CACUGGC- -5'
29725 5' -56.1 NC_006273.1 + 163169 0.66 0.953866
Target:  5'- -aUCugGau-GCGCGCUCgcugGUGGCCGu -3'
miRNA:   3'- caGGugCaguCGUGCGAGa---CACUGGC- -5'
29725 5' -56.1 NC_006273.1 + 32093 0.66 0.953866
Target:  5'- aUCUGCGgUGGCACGC-CUGUGuACCc -3'
miRNA:   3'- cAGGUGCaGUCGUGCGaGACAC-UGGc -5'
29725 5' -56.1 NC_006273.1 + 128400 0.66 0.953866
Target:  5'- cGUCCAUGcUCAGCGgCGUuaagCUGUGcGCCc -3'
miRNA:   3'- -CAGGUGC-AGUCGU-GCGa---GACAC-UGGc -5'
29725 5' -56.1 NC_006273.1 + 147837 0.66 0.953866
Target:  5'- uUCaCACGUUcguGGUGCGCg--GUGACCGu -3'
miRNA:   3'- cAG-GUGCAG---UCGUGCGagaCACUGGC- -5'
29725 5' -56.1 NC_006273.1 + 15327 0.66 0.952707
Target:  5'- cGUCaACGUCAGaCGCGUauggaacaccgucaUCUGUGcCCGc -3'
miRNA:   3'- -CAGgUGCAGUC-GUGCG--------------AGACACuGGC- -5'
29725 5' -56.1 NC_006273.1 + 218981 0.66 0.951527
Target:  5'- -aCCACGUCgugcgguacccgcguAGCAaacgGCgUCUGUGGCUGa -3'
miRNA:   3'- caGGUGCAG---------------UCGUg---CG-AGACACUGGC- -5'
29725 5' -56.1 NC_006273.1 + 117383 0.66 0.949925
Target:  5'- cGUCCAUGUC-GCACcCUCUGaGugCu -3'
miRNA:   3'- -CAGGUGCAGuCGUGcGAGACaCugGc -5'
29725 5' -56.1 NC_006273.1 + 233822 0.67 0.941386
Target:  5'- cGUCCGCGUC-GCGCGCcgCUagGAUCa -3'
miRNA:   3'- -CAGGUGCAGuCGUGCGa-GAcaCUGGc -5'
29725 5' -56.1 NC_006273.1 + 38929 0.67 0.941386
Target:  5'- cGUCCGCGUC-GCGCGCcgCUagGAUCa -3'
miRNA:   3'- -CAGGUGCAGuCGUGCGa-GAcaCUGGc -5'
29725 5' -56.1 NC_006273.1 + 63820 0.67 0.931956
Target:  5'- uUCCAcCGgcagCGGCACGCcgCgaGUGACCu -3'
miRNA:   3'- cAGGU-GCa---GUCGUGCGa-Ga-CACUGGc -5'
29725 5' -56.1 NC_006273.1 + 22272 0.67 0.931956
Target:  5'- cUCCAuCG-CAGcCACGCgCUgGUGGCCGa -3'
miRNA:   3'- cAGGU-GCaGUC-GUGCGaGA-CACUGGC- -5'
29725 5' -56.1 NC_006273.1 + 40677 0.67 0.916125
Target:  5'- cGUCgGCGUCcucAGCGCGUUugcggcgugCUGUGuCCGg -3'
miRNA:   3'- -CAGgUGCAG---UCGUGCGA---------GACACuGGC- -5'
29725 5' -56.1 NC_006273.1 + 739 0.67 0.916125
Target:  5'- cGUCgGCGUCcucAGCGCGUUugcggcgugCUGUGuCCGg -3'
miRNA:   3'- -CAGgUGCAG---UCGUGCGA---------GACACuGGC- -5'
29725 5' -56.1 NC_006273.1 + 204736 0.68 0.910398
Target:  5'- -gCCGCc-CGGCGCGUcgUCUGUGugCGg -3'
miRNA:   3'- caGGUGcaGUCGUGCG--AGACACugGC- -5'
29725 5' -56.1 NC_006273.1 + 217964 0.68 0.910398
Target:  5'- uUCCcacuCGUCGuCAuCGCUCUcGUGGCCGg -3'
miRNA:   3'- cAGGu---GCAGUcGU-GCGAGA-CACUGGC- -5'
29725 5' -56.1 NC_006273.1 + 196737 0.68 0.903842
Target:  5'- cGUUCGCGUCGGCGCcgcaccccgcgucGCUgCUGacGGCCGu -3'
miRNA:   3'- -CAGGUGCAGUCGUG-------------CGA-GACa-CUGGC- -5'
29725 5' -56.1 NC_006273.1 + 1845 0.68 0.903842
Target:  5'- cGUUCGCGUCGGCGCcgcaccccgcgucGCUgCUGacGGCCGu -3'
miRNA:   3'- -CAGGUGCAGUCGUG-------------CGA-GACa-CUGGC- -5'
29725 5' -56.1 NC_006273.1 + 98098 0.68 0.898279
Target:  5'- -aCCACGUCAGCGuaccaagucCGUUCggcgGgcgGACCGc -3'
miRNA:   3'- caGGUGCAGUCGU---------GCGAGa---Ca--CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.