Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29726 | 3' | -54.7 | NC_006273.1 | + | 194981 | 0.66 | 0.970755 |
Target: 5'- -uGCCGCGggugugUCGCGGGCGUgugccGGGUg -3' miRNA: 3'- uuUGGCGCagug--AGUGCCUGCA-----UCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 88 | 0.66 | 0.970755 |
Target: 5'- -uGCCGCGggugugUCGCGGGCGUgugccGGGUg -3' miRNA: 3'- uuUGGCGCagug--AGUGCCUGCA-----UCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 120469 | 0.66 | 0.976024 |
Target: 5'- aAAGuuGCGUguCUgAgUGGACGUGGGUu -3' miRNA: 3'- -UUUggCGCAguGAgU-GCCUGCAUCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 86795 | 0.66 | 0.978381 |
Target: 5'- uGGACCGCGUagACgggCACGGGCGggaaaccGGa -3' miRNA: 3'- -UUUGGCGCAg-UGa--GUGCCUGCau-----CCa -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 139654 | 0.66 | 0.978381 |
Target: 5'- aAAACCaCG-UugUCGCGGACGUGGc- -3' miRNA: 3'- -UUUGGcGCaGugAGUGCCUGCAUCca -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 187295 | 0.65 | 0.979925 |
Target: 5'- uGAACUGCGUCGCggaucccgUCACGGguuucaacagaucgACGUcGGUc -3' miRNA: 3'- -UUUGGCGCAGUG--------AGUGCC--------------UGCAuCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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