Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29726 | 3' | -54.7 | NC_006273.1 | + | 51918 | 0.75 | 0.633374 |
Target: 5'- uGugCGCGU-GCUgACGGACGUGGGa -3' miRNA: 3'- uUugGCGCAgUGAgUGCCUGCAUCCa -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 187295 | 0.65 | 0.979925 |
Target: 5'- uGAACUGCGUCGCggaucccgUCACGGguuucaacagaucgACGUcGGUc -3' miRNA: 3'- -UUUGGCGCAGUG--------AGUGCC--------------UGCAuCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 139654 | 0.66 | 0.978381 |
Target: 5'- aAAACCaCG-UugUCGCGGACGUGGc- -3' miRNA: 3'- -UUUGGcGCaGugAGUGCCUGCAUCca -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 120469 | 0.66 | 0.976024 |
Target: 5'- aAAGuuGCGUguCUgAgUGGACGUGGGUu -3' miRNA: 3'- -UUUggCGCAguGAgU-GCCUGCAUCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 194981 | 0.66 | 0.970755 |
Target: 5'- -uGCCGCGggugugUCGCGGGCGUgugccGGGUg -3' miRNA: 3'- uuUGGCGCagug--AGUGCCUGCA-----UCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 144103 | 0.67 | 0.964704 |
Target: 5'- uGGCCGCGcUgGCUCGCG-ACGaGGGUc -3' miRNA: 3'- uUUGGCGC-AgUGAGUGCcUGCaUCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 104247 | 0.67 | 0.950081 |
Target: 5'- -cGCCGUGUUcggGCgagagCACGGGCGUGcGGa -3' miRNA: 3'- uuUGGCGCAG---UGa----GUGCCUGCAU-CCa -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 201161 | 0.68 | 0.941443 |
Target: 5'- --gUCGUGUCGCgaCAUGGACGUgcAGGg -3' miRNA: 3'- uuuGGCGCAGUGa-GUGCCUGCA--UCCa -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 111131 | 0.68 | 0.92677 |
Target: 5'- cGACCGUG-CugUUACGGAggcugcuguUGUAGGUa -3' miRNA: 3'- uUUGGCGCaGugAGUGCCU---------GCAUCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 142801 | 0.69 | 0.891218 |
Target: 5'- cAGCCGcCGUCGCUggugggCACGGGCGUGcaccgcGGUc -3' miRNA: 3'- uUUGGC-GCAGUGA------GUGCCUGCAU------CCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 79944 | 0.71 | 0.823466 |
Target: 5'- aGAAcCCGCGUCGCcgggCACGG-CGgcGGUa -3' miRNA: 3'- -UUU-GGCGCAGUGa---GUGCCuGCauCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 172219 | 0.68 | 0.921417 |
Target: 5'- cGGCCGCGcCGCgagACGGACGcaAGGUa -3' miRNA: 3'- uUUGGCGCaGUGag-UGCCUGCa-UCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 204159 | 0.69 | 0.89771 |
Target: 5'- -uACCGUGUCGCcccgCACGGugGUccGUa -3' miRNA: 3'- uuUGGCGCAGUGa---GUGCCugCAucCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 147258 | 0.7 | 0.87044 |
Target: 5'- uGGCCGCGUCGCUgAUGGACa----- -3' miRNA: 3'- uUUGGCGCAGUGAgUGCCUGcaucca -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 103067 | 0.71 | 0.815007 |
Target: 5'- cAAACCGC---ACUCGCGGcgACGUGGGUu -3' miRNA: 3'- -UUUGGCGcagUGAGUGCC--UGCAUCCA- -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 81114 | 0.72 | 0.797616 |
Target: 5'- aAAGCCGCGUCAuCUCGgCGG-CGUacgAGGg -3' miRNA: 3'- -UUUGGCGCAGU-GAGU-GCCuGCA---UCCa -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 118315 | 0.72 | 0.779647 |
Target: 5'- cAGCUuggGCaGUCGCUCACGGAUGUAGa- -3' miRNA: 3'- uUUGG---CG-CAGUGAGUGCCUGCAUCca -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 213134 | 0.73 | 0.742243 |
Target: 5'- gGAGCCGCGUCGCUCGCcGGCGc---- -3' miRNA: 3'- -UUUGGCGCAGUGAGUGcCUGCaucca -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 187515 | 0.74 | 0.653491 |
Target: 5'- gAAGCCGCGUCGgUCACaGGACGgcGa- -3' miRNA: 3'- -UUUGGCGCAGUgAGUG-CCUGCauCca -5' |
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29726 | 3' | -54.7 | NC_006273.1 | + | 86795 | 0.66 | 0.978381 |
Target: 5'- uGGACCGCGUagACgggCACGGGCGggaaaccGGa -3' miRNA: 3'- -UUUGGCGCAg-UGa--GUGCCUGCau-----CCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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