miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29726 5' -47.2 NC_006273.1 + 111686 0.66 0.99998
Target:  5'- uGACCgcaACGacGAUCgUGAACGCGg- -3'
miRNA:   3'- uUUGGa--UGCaaUUAGgACUUGCGCaa -5'
29726 5' -47.2 NC_006273.1 + 87076 0.66 0.99998
Target:  5'- uAGCCgccGCGUUucUCUUGAACgGCGUg -3'
miRNA:   3'- uUUGGa--UGCAAuuAGGACUUG-CGCAa -5'
29726 5' -47.2 NC_006273.1 + 40329 0.66 0.999963
Target:  5'- gGAACCUACGgcggcGAUCCccgucGAGCgGCGUg -3'
miRNA:   3'- -UUUGGAUGCaa---UUAGGa----CUUG-CGCAa -5'
29726 5' -47.2 NC_006273.1 + 259 0.66 0.999951
Target:  5'- --gUCUGCGUguGUCCUcGACGCGg- -3'
miRNA:   3'- uuuGGAUGCAauUAGGAcUUGCGCaa -5'
29726 5' -47.2 NC_006273.1 + 235090 0.66 0.999951
Target:  5'- --gUCUGCGUguGUCCUcGACGCGg- -3'
miRNA:   3'- uuuGGAUGCAauUAGGAcUUGCGCaa -5'
29726 5' -47.2 NC_006273.1 + 195152 0.66 0.999951
Target:  5'- --gUCUGCGUguGUCCUcGACGCGg- -3'
miRNA:   3'- uuuGGAUGCAauUAGGAcUUGCGCaa -5'
29726 5' -47.2 NC_006273.1 + 135079 0.67 0.999914
Target:  5'- uGGCCUACGUgugcUCCUucucGCGCGUg -3'
miRNA:   3'- uUUGGAUGCAauu-AGGAcu--UGCGCAa -5'
29726 5' -47.2 NC_006273.1 + 33350 0.68 0.999691
Target:  5'- cAGCC-GCGUgcGAUCCUGcGGCGCGUc -3'
miRNA:   3'- uUUGGaUGCAa-UUAGGAC-UUGCGCAa -5'
29726 5' -47.2 NC_006273.1 + 150028 0.68 0.99961
Target:  5'- cGGCUUGCGUggaggUCUGGGCGCGa- -3'
miRNA:   3'- uUUGGAUGCAauua-GGACUUGCGCaa -5'
29726 5' -47.2 NC_006273.1 + 26472 0.68 0.99961
Target:  5'- -cACCggUGUUGGUUCUGGGCGCGc- -3'
miRNA:   3'- uuUGGauGCAAUUAGGACUUGCGCaa -5'
29726 5' -47.2 NC_006273.1 + 205824 0.68 0.999511
Target:  5'- ---aCUGCGccgacUUAAUCgUGAGCGCGUa -3'
miRNA:   3'- uuugGAUGC-----AAUUAGgACUUGCGCAa -5'
29726 5' -47.2 NC_006273.1 + 182296 0.69 0.998328
Target:  5'- aAAACCccACGU--GUCUUGGGCGCGUc -3'
miRNA:   3'- -UUUGGa-UGCAauUAGGACUUGCGCAa -5'
29726 5' -47.2 NC_006273.1 + 196258 0.71 0.993642
Target:  5'- cGGACCUGCGUcagcUGucgCCgcgGGACGCGUg -3'
miRNA:   3'- -UUUGGAUGCA----AUua-GGa--CUUGCGCAa -5'
29726 5' -47.2 NC_006273.1 + 1365 0.71 0.993642
Target:  5'- cGGACCUGCGUcagcUGucgCCgcgGGACGCGUg -3'
miRNA:   3'- -UUUGGAUGCA----AUua-GGa--CUUGCGCAa -5'
29726 5' -47.2 NC_006273.1 + 48301 0.77 0.89219
Target:  5'- aAAACCUACGgc-AUCuCUGAACGCGg- -3'
miRNA:   3'- -UUUGGAUGCaauUAG-GACUUGCGCaa -5'
29726 5' -47.2 NC_006273.1 + 210028 1.03 0.06058
Target:  5'- aAAACCUACGUUAAUCCUGAACGCGUUu -3'
miRNA:   3'- -UUUGGAUGCAAUUAGGACUUGCGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.