miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29728 3' -39 NC_006273.1 + 208537 0.73 1
Target:  5'- gCUGCGGAUgauguggcucacgGGCAUUUUGGUGGc -3'
miRNA:   3'- -GAUGUUUGa------------UCGUAAGACCACU- -5'
29728 3' -39 NC_006273.1 + 55234 0.66 1
Target:  5'- -gGCAcACUaAGCGcUCUGGUGu -3'
miRNA:   3'- gaUGUuUGA-UCGUaAGACCACu -5'
29728 3' -39 NC_006273.1 + 82606 0.66 1
Target:  5'- gUGCAAACgGGCGUgCUGGg-- -3'
miRNA:   3'- gAUGUUUGaUCGUAaGACCacu -5'
29728 3' -39 NC_006273.1 + 138105 0.67 1
Target:  5'- -gAC-GGCUAGCuUUUUGGUGGu -3'
miRNA:   3'- gaUGuUUGAUCGuAAGACCACU- -5'
29728 3' -39 NC_006273.1 + 20928 0.67 1
Target:  5'- uUACgGGGCUGGCGuUUCUaGGUGGc -3'
miRNA:   3'- gAUG-UUUGAUCGU-AAGA-CCACU- -5'
29728 3' -39 NC_006273.1 + 67242 0.68 1
Target:  5'- cCUACGGcguGCUGGCuUUcCUGGUGu -3'
miRNA:   3'- -GAUGUU---UGAUCGuAA-GACCACu -5'
29728 3' -39 NC_006273.1 + 178191 0.68 1
Target:  5'- cCUACGGGCaccguGCAgaUUCUGGUGc -3'
miRNA:   3'- -GAUGUUUGau---CGU--AAGACCACu -5'
29728 3' -39 NC_006273.1 + 136741 0.68 1
Target:  5'- aUGCGAAUUGGUGgcuaUGGUGAg -3'
miRNA:   3'- gAUGUUUGAUCGUaag-ACCACU- -5'
29728 3' -39 NC_006273.1 + 168992 0.7 1
Target:  5'- uCUGCAAcuCUAGCAUUUUGGc-- -3'
miRNA:   3'- -GAUGUUu-GAUCGUAAGACCacu -5'
29728 3' -39 NC_006273.1 + 143689 0.71 1
Target:  5'- gUGCGucGGCUAGCggUCUGGcUGGa -3'
miRNA:   3'- gAUGU--UUGAUCGuaAGACC-ACU- -5'
29728 3' -39 NC_006273.1 + 4241 0.67 1
Target:  5'- uUGCGGAUUGaCAUUCUuGGUGGu -3'
miRNA:   3'- gAUGUUUGAUcGUAAGA-CCACU- -5'
29728 3' -39 NC_006273.1 + 72686 0.67 1
Target:  5'- -gGCGAGCUGGUGg---GGUGAa -3'
miRNA:   3'- gaUGUUUGAUCGUaagaCCACU- -5'
29728 3' -39 NC_006273.1 + 152322 0.67 1
Target:  5'- -aGC-AACUGGCAgaucUUUUGGUGGc -3'
miRNA:   3'- gaUGuUUGAUCGU----AAGACCACU- -5'
29728 3' -39 NC_006273.1 + 154424 0.68 1
Target:  5'- uCUGCGAGCUGGCcgacccgCUGGg-- -3'
miRNA:   3'- -GAUGUUUGAUCGuaa----GACCacu -5'
29728 3' -39 NC_006273.1 + 125046 0.68 1
Target:  5'- uCUACGAACUGGUGUaggcccagCUGGUa- -3'
miRNA:   3'- -GAUGUUUGAUCGUAa-------GACCAcu -5'
29728 3' -39 NC_006273.1 + 132611 0.69 1
Target:  5'- -gGCAGAagcaUAGCGaUCUGGUGu -3'
miRNA:   3'- gaUGUUUg---AUCGUaAGACCACu -5'
29728 3' -39 NC_006273.1 + 12209 0.72 1
Target:  5'- -aACAAuuauccuauCUAGCAUUCUGGUa- -3'
miRNA:   3'- gaUGUUu--------GAUCGUAAGACCAcu -5'
29728 3' -39 NC_006273.1 + 70882 0.66 1
Target:  5'- -cGCGAACUGGCGcguacGGUGGa -3'
miRNA:   3'- gaUGUUUGAUCGUaaga-CCACU- -5'
29728 3' -39 NC_006273.1 + 207388 1.08 0.184019
Target:  5'- uCUACAAACUAGCAUUCUGGUGAg -3'
miRNA:   3'- -GAUGUUUGAUCGUAAGACCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.