miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29728 5' -41.1 NC_006273.1 + 35525 0.66 1
Target:  5'- uUUUUAuCGGGAauGGGCUAGg-- -3'
miRNA:   3'- -AGAGU-GCCCU--UCCGAUCaau -5'
29728 5' -41.1 NC_006273.1 + 206979 0.67 1
Target:  5'- --cCACGuGGAaccuuuAGGCUGGUUGg -3'
miRNA:   3'- agaGUGC-CCU------UCCGAUCAAU- -5'
29728 5' -41.1 NC_006273.1 + 184522 0.67 1
Target:  5'- --cCACcuGGAAGGCUGGUUu -3'
miRNA:   3'- agaGUGc-CCUUCCGAUCAAu -5'
29728 5' -41.1 NC_006273.1 + 31417 0.69 1
Target:  5'- cUUCACGGGAagaagAGGCUAa--- -3'
miRNA:   3'- aGAGUGCCCU-----UCCGAUcaau -5'
29728 5' -41.1 NC_006273.1 + 160305 0.67 1
Target:  5'- ---gACGGGGccGGGCUGGUc- -3'
miRNA:   3'- agagUGCCCU--UCCGAUCAau -5'
29728 5' -41.1 NC_006273.1 + 193609 0.66 1
Target:  5'- ---gGCGGGcAGGGCUGGa-- -3'
miRNA:   3'- agagUGCCC-UUCCGAUCaau -5'
29728 5' -41.1 NC_006273.1 + 206449 0.67 1
Target:  5'- -gUCACGGGGaacAGGgUGGUg- -3'
miRNA:   3'- agAGUGCCCU---UCCgAUCAau -5'
29728 5' -41.1 NC_006273.1 + 112240 0.67 1
Target:  5'- --gCGCGGcGggGGCUGGc-- -3'
miRNA:   3'- agaGUGCC-CuuCCGAUCaau -5'
29728 5' -41.1 NC_006273.1 + 40539 0.67 1
Target:  5'- gCUCACGGGGaccgaGGGC-GGUc- -3'
miRNA:   3'- aGAGUGCCCU-----UCCGaUCAau -5'
29728 5' -41.1 NC_006273.1 + 167693 0.68 1
Target:  5'- -gUCACGGGgcGGCgcgAGggAg -3'
miRNA:   3'- agAGUGCCCuuCCGa--UCaaU- -5'
29728 5' -41.1 NC_006273.1 + 184586 0.66 1
Target:  5'- gUCU-ACGGGGAGGUUGcGUg- -3'
miRNA:   3'- -AGAgUGCCCUUCCGAU-CAau -5'
29728 5' -41.1 NC_006273.1 + 141082 0.67 1
Target:  5'- cCUCGgcCGGGGAGGgUGGggGg -3'
miRNA:   3'- aGAGU--GCCCUUCCgAUCaaU- -5'
29728 5' -41.1 NC_006273.1 + 223397 0.69 1
Target:  5'- ---aACGGGAAGGCUAa--- -3'
miRNA:   3'- agagUGCCCUUCCGAUcaau -5'
29728 5' -41.1 NC_006273.1 + 94674 0.68 1
Target:  5'- --cCACGGGG-GGCUGGg-- -3'
miRNA:   3'- agaGUGCCCUuCCGAUCaau -5'
29728 5' -41.1 NC_006273.1 + 1104 0.7 0.999999
Target:  5'- -gUCGCGGGAuggcGGGCU-GUUGc -3'
miRNA:   3'- agAGUGCCCU----UCCGAuCAAU- -5'
29728 5' -41.1 NC_006273.1 + 144076 0.7 0.999999
Target:  5'- gCUCACGGuGGAGGCg----- -3'
miRNA:   3'- aGAGUGCC-CUUCCGaucaau -5'
29728 5' -41.1 NC_006273.1 + 206374 0.7 0.999999
Target:  5'- gUCUUACaaGGGAAGGCU-GUUc -3'
miRNA:   3'- -AGAGUG--CCCUUCCGAuCAAu -5'
29728 5' -41.1 NC_006273.1 + 41042 0.7 0.999999
Target:  5'- -gUCGCGGGAuggcGGGCU-GUUGc -3'
miRNA:   3'- agAGUGCCCU----UCCGAuCAAU- -5'
29728 5' -41.1 NC_006273.1 + 172961 0.7 0.999998
Target:  5'- gUCUUA-GGGAAGGCUgAGUUc -3'
miRNA:   3'- -AGAGUgCCCUUCCGA-UCAAu -5'
29728 5' -41.1 NC_006273.1 + 43845 0.73 0.999922
Target:  5'- gUUUCAgGGGAAGGCUGu--- -3'
miRNA:   3'- -AGAGUgCCCUUCCGAUcaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.