miRNA display CGI


Results 21 - 29 of 29 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2973 3' -58.8 NC_001493.1 + 105870 0.7 0.519271
Target:  5'- aCGACCG-GGuacACGGAgacgagguCCCGGGGGg-- -3'
miRNA:   3'- aGCUGGCaCU---UGCCU--------GGGCCCCCauu -5'
2973 3' -58.8 NC_001493.1 + 107210 0.7 0.528952
Target:  5'- gUCGACC-UGAggGCGGcCCCGGuucuGGGUAAa -3'
miRNA:   3'- -AGCUGGcACU--UGCCuGGGCC----CCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 107638 0.72 0.453723
Target:  5'- --uGCCGUGAGuuGAUCCGGGGGUu- -3'
miRNA:   3'- agcUGGCACUUgcCUGGGCCCCCAuu -5'
2973 3' -58.8 NC_001493.1 + 107753 0.66 0.755805
Target:  5'- cCGACCGauccguaUGuuACGGGUgCGGGGGUGAc -3'
miRNA:   3'- aGCUGGC-------ACu-UGCCUGgGCCCCCAUU- -5'
2973 3' -58.8 NC_001493.1 + 109852 0.67 0.698615
Target:  5'- uUCGGCCucGAGCGcGCCCGGGGcgauGUGAc -3'
miRNA:   3'- -AGCUGGcaCUUGCcUGGGCCCC----CAUU- -5'
2973 3' -58.8 NC_001493.1 + 112991 0.66 0.756748
Target:  5'- uUCG-CCGggaGGAUGGGCUCGGGGa--- -3'
miRNA:   3'- -AGCuGGCa--CUUGCCUGGGCCCCcauu -5'
2973 3' -58.8 NC_001493.1 + 114503 0.66 0.792592
Target:  5'- -aGACgGUGAGCGGgucagcaACCCcacggacaGGGGGUu- -3'
miRNA:   3'- agCUGgCACUUGCC-------UGGG--------CCCCCAuu -5'
2973 3' -58.8 NC_001493.1 + 123906 0.68 0.638525
Target:  5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3'
miRNA:   3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5'
2973 3' -58.8 NC_001493.1 + 128244 0.67 0.698615
Target:  5'- cCGACCccGGACGcGACCCGGGaGUc- -3'
miRNA:   3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.