Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 105870 | 0.7 | 0.519271 |
Target: 5'- aCGACCG-GGuacACGGAgacgagguCCCGGGGGg-- -3' miRNA: 3'- aGCUGGCaCU---UGCCU--------GGGCCCCCauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 107210 | 0.7 | 0.528952 |
Target: 5'- gUCGACC-UGAggGCGGcCCCGGuucuGGGUAAa -3' miRNA: 3'- -AGCUGGcACU--UGCCuGGGCC----CCCAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 107638 | 0.72 | 0.453723 |
Target: 5'- --uGCCGUGAGuuGAUCCGGGGGUu- -3' miRNA: 3'- agcUGGCACUUgcCUGGGCCCCCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 107753 | 0.66 | 0.755805 |
Target: 5'- cCGACCGauccguaUGuuACGGGUgCGGGGGUGAc -3' miRNA: 3'- aGCUGGC-------ACu-UGCCUGgGCCCCCAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 109852 | 0.67 | 0.698615 |
Target: 5'- uUCGGCCucGAGCGcGCCCGGGGcgauGUGAc -3' miRNA: 3'- -AGCUGGcaCUUGCcUGGGCCCC----CAUU- -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 112991 | 0.66 | 0.756748 |
Target: 5'- uUCG-CCGggaGGAUGGGCUCGGGGa--- -3' miRNA: 3'- -AGCuGGCa--CUUGCCUGGGCCCCcauu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 114503 | 0.66 | 0.792592 |
Target: 5'- -aGACgGUGAGCGGgucagcaACCCcacggacaGGGGGUu- -3' miRNA: 3'- agCUGgCACUUGCC-------UGGG--------CCCCCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 123906 | 0.68 | 0.638525 |
Target: 5'- cUCGAUCGcccUGAAgcgcgguuCGGGCCgGGGGGUc- -3' miRNA: 3'- -AGCUGGC---ACUU--------GCCUGGgCCCCCAuu -5' |
|||||||
2973 | 3' | -58.8 | NC_001493.1 | + | 128244 | 0.67 | 0.698615 |
Target: 5'- cCGACCccGGACGcGACCCGGGaGUc- -3' miRNA: 3'- aGCUGGcaCUUGC-CUGGGCCCcCAuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home