miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2973 5' -61.6 NC_001493.1 + 28432 0.66 0.636417
Target:  5'- aCGUuGCgaGCgAGGcGgCGCUCCGCGAGc -3'
miRNA:   3'- -GCGcUGgaCG-UCC-CgGCGAGGCGUUC- -5'
2973 5' -61.6 NC_001493.1 + 129791 0.66 0.636417
Target:  5'- aCGCGggggccgcuaACCUcaCGGGGuuGCUCCGgGGGu -3'
miRNA:   3'- -GCGC----------UGGAc-GUCCCggCGAGGCgUUC- -5'
2973 5' -61.6 NC_001493.1 + 14237 0.66 0.636417
Target:  5'- aCGCGggggccgcuaACCUcaCGGGGuuGCUCCGgGGGu -3'
miRNA:   3'- -GCGC----------UGGAc-GUCCCggCGAGGCgUUC- -5'
2973 5' -61.6 NC_001493.1 + 29597 0.66 0.626442
Target:  5'- uCGCGACCcugaggucacggUGCAGGuucgcgauCUGCUCCGCc-- -3'
miRNA:   3'- -GCGCUGG------------ACGUCCc-------GGCGAGGCGuuc -5'
2973 5' -61.6 NC_001493.1 + 94492 0.66 0.610493
Target:  5'- gGaCGACCUccccucgugucccccGCAGGGCCGUUUcuggCGCAc- -3'
miRNA:   3'- gC-GCUGGA---------------CGUCCCGGCGAG----GCGUuc -5'
2973 5' -61.6 NC_001493.1 + 71486 0.67 0.590616
Target:  5'- cCGCGACCgugGCuuucaaucaggagacGGGuGCCGUUCuCGCGc- -3'
miRNA:   3'- -GCGCUGGa--CG---------------UCC-CGGCGAG-GCGUuc -5'
2973 5' -61.6 NC_001493.1 + 85243 0.67 0.557115
Target:  5'- gCGUGGCCcGUGGGGauaaCG-UCCGCGAGu -3'
miRNA:   3'- -GCGCUGGaCGUCCCg---GCgAGGCGUUC- -5'
2973 5' -61.6 NC_001493.1 + 18780 0.68 0.499505
Target:  5'- aCGCGGCCgucguacuCGGGGcCCGUUCCGguGu -3'
miRNA:   3'- -GCGCUGGac------GUCCC-GGCGAGGCguUc -5'
2973 5' -61.6 NC_001493.1 + 29749 0.68 0.490151
Target:  5'- cCGUGACCU-CAGGGUCGCgaccgaacgacUCCaCAAGa -3'
miRNA:   3'- -GCGCUGGAcGUCCCGGCG-----------AGGcGUUC- -5'
2973 5' -61.6 NC_001493.1 + 100470 0.68 0.471695
Target:  5'- cCGCGACaacccCGGGGCCGC-CCGUg-- -3'
miRNA:   3'- -GCGCUGgac--GUCCCGGCGaGGCGuuc -5'
2973 5' -61.6 NC_001493.1 + 133326 0.69 0.427178
Target:  5'- aGCGAUCccgggGuCGGGGCCGCaaCGCGGGc -3'
miRNA:   3'- gCGCUGGa----C-GUCCCGGCGagGCGUUC- -5'
2973 5' -61.6 NC_001493.1 + 17772 0.69 0.427178
Target:  5'- aGCGAUCccgggGuCGGGGCCGCaaCGCGGGc -3'
miRNA:   3'- gCGCUGGa----C-GUCCCGGCGagGCGUUC- -5'
2973 5' -61.6 NC_001493.1 + 101270 0.69 0.418575
Target:  5'- gGUGACCUGgAGGGagauaUCGCUgCgCGCAAGg -3'
miRNA:   3'- gCGCUGGACgUCCC-----GGCGA-G-GCGUUC- -5'
2973 5' -61.6 NC_001493.1 + 90326 0.7 0.393414
Target:  5'- cCGCGuCCgUGUAGGGCUGUUCCaCGAu -3'
miRNA:   3'- -GCGCuGG-ACGUCCCGGCGAGGcGUUc -5'
2973 5' -61.6 NC_001493.1 + 28749 0.7 0.393414
Target:  5'- aCGCGACCgagaugcGCAcGGCCGCUggagCGCGGGa -3'
miRNA:   3'- -GCGCUGGa------CGUcCCGGCGAg---GCGUUC- -5'
2973 5' -61.6 NC_001493.1 + 36222 0.72 0.303061
Target:  5'- gGCGGCCUGCgcGGGGgUGCUCaGUggGg -3'
miRNA:   3'- gCGCUGGACG--UCCCgGCGAGgCGuuC- -5'
2973 5' -61.6 NC_001493.1 + 93808 1.07 0.001004
Target:  5'- gCGCGACCUGCAGGGCCGCUCCGCAAGc -3'
miRNA:   3'- -GCGCUGGACGUCCCGGCGAGGCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.