miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29730 3' -57 NC_006273.1 + 140855 0.66 0.932269
Target:  5'- cGGuGCGCGGCC-GCUucucgggGCGCgAGgUGCc -3'
miRNA:   3'- -CCuCGCGCCGGaCGA-------UGUG-UCgAUGa -5'
29730 3' -57 NC_006273.1 + 104161 0.66 0.932269
Target:  5'- aGAGCGCGGCCuucauauUGauaACGCGGUUGgUg -3'
miRNA:   3'- cCUCGCGCCGG-------ACga-UGUGUCGAUgA- -5'
29730 3' -57 NC_006273.1 + 168524 0.66 0.927213
Target:  5'- --uGCGCguucuguaGGCgCUGCUGCACuucggguAGCUGCa -3'
miRNA:   3'- ccuCGCG--------CCG-GACGAUGUG-------UCGAUGa -5'
29730 3' -57 NC_006273.1 + 136615 0.66 0.922468
Target:  5'- uGGAGCagcggguaGCGcGUUUGUUGCGCGGCgACg -3'
miRNA:   3'- -CCUCG--------CGC-CGGACGAUGUGUCGaUGa -5'
29730 3' -57 NC_006273.1 + 80958 0.66 0.922468
Target:  5'- -uAGCGCGGCCacgaGCUgucgucggGCACGGCcACc -3'
miRNA:   3'- ccUCGCGCCGGa---CGA--------UGUGUCGaUGa -5'
29730 3' -57 NC_006273.1 + 176821 0.66 0.922468
Target:  5'- -cGGCGUGGCUgGCUugcACACGGC-GCUc -3'
miRNA:   3'- ccUCGCGCCGGaCGA---UGUGUCGaUGA- -5'
29730 3' -57 NC_006273.1 + 134866 0.66 0.922468
Target:  5'- cGGuGgGCGGCaUGCgu--CAGCUGCUu -3'
miRNA:   3'- -CCuCgCGCCGgACGauguGUCGAUGA- -5'
29730 3' -57 NC_006273.1 + 113763 0.66 0.922468
Target:  5'- aGGA-CGUGGCCUGCgGCACguGGUgUGCg -3'
miRNA:   3'- -CCUcGCGCCGGACGaUGUG--UCG-AUGa -5'
29730 3' -57 NC_006273.1 + 38827 0.66 0.916981
Target:  5'- cGGAGCGcCGGCUgagGCa--GCAGCgucGCg -3'
miRNA:   3'- -CCUCGC-GCCGGa--CGaugUGUCGa--UGa -5'
29730 3' -57 NC_006273.1 + 233719 0.66 0.916981
Target:  5'- cGGAGCGcCGGCUgagGCa--GCAGCgucGCg -3'
miRNA:   3'- -CCUCGC-GCCGGa--CGaugUGUCGa--UGa -5'
29730 3' -57 NC_006273.1 + 105092 0.66 0.916981
Target:  5'- -aAGCGCGuaCaUGCUcgaggccgGCGCGGCUGCg -3'
miRNA:   3'- ccUCGCGCcgG-ACGA--------UGUGUCGAUGa -5'
29730 3' -57 NC_006273.1 + 182430 0.66 0.911268
Target:  5'- aGGuAGCGUgGGCCUGCUggccuuuugguACuuUAGCUACc -3'
miRNA:   3'- -CC-UCGCG-CCGGACGA-----------UGu-GUCGAUGa -5'
29730 3' -57 NC_006273.1 + 189965 0.66 0.911268
Target:  5'- cGGcguGgGCGGCUcGCggagACugGGCUGCa -3'
miRNA:   3'- -CCu--CgCGCCGGaCGa---UGugUCGAUGa -5'
29730 3' -57 NC_006273.1 + 216224 0.66 0.911268
Target:  5'- cGGAGCGCGGCaca-UGgGCGGCg--- -3'
miRNA:   3'- -CCUCGCGCCGgacgAUgUGUCGauga -5'
29730 3' -57 NC_006273.1 + 164220 0.66 0.911268
Target:  5'- -aGGCGCGGgUggUGUUGCGCGGCgACg -3'
miRNA:   3'- ccUCGCGCCgG--ACGAUGUGUCGaUGa -5'
29730 3' -57 NC_006273.1 + 106865 0.67 0.899171
Target:  5'- gGGAGCGCGGCa-GCcGCgACAGUa--- -3'
miRNA:   3'- -CCUCGCGCCGgaCGaUG-UGUCGauga -5'
29730 3' -57 NC_006273.1 + 104351 0.67 0.899171
Target:  5'- uGGcGCGCGGCCagGUaGCGCgagAGUUGCa -3'
miRNA:   3'- -CCuCGCGCCGGa-CGaUGUG---UCGAUGa -5'
29730 3' -57 NC_006273.1 + 1614 0.67 0.899171
Target:  5'- aGGuGGUGCGGCUguaccGCUGCAacCGGCUGg- -3'
miRNA:   3'- -CC-UCGCGCCGGa----CGAUGU--GUCGAUga -5'
29730 3' -57 NC_006273.1 + 82352 0.67 0.899171
Target:  5'- uGAGCuuccuGCGG-UUGCUGCACGGCUuuCUg -3'
miRNA:   3'- cCUCG-----CGCCgGACGAUGUGUCGAu-GA- -5'
29730 3' -57 NC_006273.1 + 196507 0.67 0.899171
Target:  5'- aGGuGGUGCGGCUguaccGCUGCAacCGGCUGg- -3'
miRNA:   3'- -CC-UCGCGCCGGa----CGAUGU--GUCGAUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.