miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29730 5' -60.3 NC_006273.1 + 197391 0.66 0.838877
Target:  5'- --cGCGCGCcGCGCuguGGGCGcGCgaGCc -3'
miRNA:   3'- ccuCGCGCGaCGCGu--CCCGUcUGa-CG- -5'
29730 5' -60.3 NC_006273.1 + 64749 0.66 0.836538
Target:  5'- aGAGCGCgaguugcaaaagaaGCUGCccGCcggcGGGCGG-CUGCc -3'
miRNA:   3'- cCUCGCG--------------CGACG--CGu---CCCGUCuGACG- -5'
29730 5' -60.3 NC_006273.1 + 189697 0.66 0.834185
Target:  5'- uGGAGCGCGCccacaUGUGCGGcgucuGGUgcaacaagccgaugaGGACgugGCa -3'
miRNA:   3'- -CCUCGCGCG-----ACGCGUC-----CCG---------------UCUGa--CG- -5'
29730 5' -60.3 NC_006273.1 + 199630 0.66 0.834185
Target:  5'- cGGAGCGCGUcuuccccggcuuuagUGaUGCcaucGGGCAGGCg-- -3'
miRNA:   3'- -CCUCGCGCG---------------AC-GCGu---CCCGUCUGacg -5'
29730 5' -60.3 NC_006273.1 + 92133 0.66 0.831024
Target:  5'- cGGGGaaaCGCGC-GUGCGGGucGCAGAugagcagcuuCUGCa -3'
miRNA:   3'- -CCUC---GCGCGaCGCGUCC--CGUCU----------GACG- -5'
29730 5' -60.3 NC_006273.1 + 176297 0.66 0.831024
Target:  5'- uGAGCaGCGCUacuCGCuguuuGGGCGGcCUGUc -3'
miRNA:   3'- cCUCG-CGCGAc--GCGu----CCCGUCuGACG- -5'
29730 5' -60.3 NC_006273.1 + 129031 0.66 0.831024
Target:  5'- aGGAugGUGC-CUucgaacgucucGCGCAGauacgugaGGCAGGCUGCg -3'
miRNA:   3'- -CCU--CGCGcGA-----------CGCGUC--------CCGUCUGACG- -5'
29730 5' -60.3 NC_006273.1 + 89940 0.66 0.831024
Target:  5'- uGAGaaaaCGCGaCUGCacggugaucacGCAGGGCuccuucuuGGGCUGCu -3'
miRNA:   3'- cCUC----GCGC-GACG-----------CGUCCCG--------UCUGACG- -5'
29730 5' -60.3 NC_006273.1 + 105937 0.66 0.828637
Target:  5'- gGGGGUGgGCgGCaCgaucaucuguccuaGGGGguGACUGCc -3'
miRNA:   3'- -CCUCGCgCGaCGcG--------------UCCCguCUGACG- -5'
29730 5' -60.3 NC_006273.1 + 87519 0.66 0.823009
Target:  5'- cGGAGUuuGCcaGCGCGGcGGCGGucuCUGUc -3'
miRNA:   3'- -CCUCGcgCGa-CGCGUC-CCGUCu--GACG- -5'
29730 5' -60.3 NC_006273.1 + 147879 0.66 0.823009
Target:  5'- aGGuGCGUGCUGUGCAucGCGccagcuacGCUGCg -3'
miRNA:   3'- -CCuCGCGCGACGCGUccCGUc-------UGACG- -5'
29730 5' -60.3 NC_006273.1 + 86476 0.66 0.823009
Target:  5'- gGGAuGCGCGUUGU-CAGGuccaGCAGGucCUGCu -3'
miRNA:   3'- -CCU-CGCGCGACGcGUCC----CGUCU--GACG- -5'
29730 5' -60.3 NC_006273.1 + 189870 0.66 0.822199
Target:  5'- gGGAGaCGCGUcGgGCGgaccgccGGGCAucgccgucGGCUGCg -3'
miRNA:   3'- -CCUC-GCGCGaCgCGU-------CCCGU--------CUGACG- -5'
29730 5' -60.3 NC_006273.1 + 115440 0.66 0.818124
Target:  5'- -uGGCcuuuGCGCUGcCGCuGGaccgcgugcccguuaGCGGACUGCa -3'
miRNA:   3'- ccUCG----CGCGAC-GCGuCC---------------CGUCUGACG- -5'
29730 5' -60.3 NC_006273.1 + 14005 0.66 0.814837
Target:  5'- uGGGGCGgGC-GCGgGGuGGCGGA--GCg -3'
miRNA:   3'- -CCUCGCgCGaCGCgUC-CCGUCUgaCG- -5'
29730 5' -60.3 NC_006273.1 + 145093 0.66 0.814837
Target:  5'- uGGcGGCgGCGCUGaucaccaccUGCGGGGCAGcCcggGCg -3'
miRNA:   3'- -CC-UCG-CGCGAC---------GCGUCCCGUCuGa--CG- -5'
29730 5' -60.3 NC_006273.1 + 162749 0.66 0.814837
Target:  5'- cGGAGCagcaguccggugGUGCUgGCGguGGuGguGGCgGCg -3'
miRNA:   3'- -CCUCG------------CGCGA-CGCguCC-CguCUGaCG- -5'
29730 5' -60.3 NC_006273.1 + 141764 0.66 0.812356
Target:  5'- uGGAuGCGCgaaGCUGCGCAGGccgccgcucaagccGCGGuACagGCc -3'
miRNA:   3'- -CCU-CGCG---CGACGCGUCC--------------CGUC-UGa-CG- -5'
29730 5' -60.3 NC_006273.1 + 82582 0.66 0.809862
Target:  5'- uGGAGCGCcucGUUGCGCcagagcgugcaaacGGGCGuGCUGg -3'
miRNA:   3'- -CCUCGCG---CGACGCGu-------------CCCGUcUGACg -5'
29730 5' -60.3 NC_006273.1 + 84054 0.66 0.806516
Target:  5'- uGAGcCGCGaaGCgGC-GGGCGGAgUGCc -3'
miRNA:   3'- cCUC-GCGCgaCG-CGuCCCGUCUgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.