miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29731 3' -55.2 NC_006273.1 + 2236 0.66 0.978388
Target:  5'- --cCGGCGgCGUCGGggaccgugccGCgCGCCAugCu -3'
miRNA:   3'- guaGCCGUgGUAGCC----------UGaGCGGUugG- -5'
29731 3' -55.2 NC_006273.1 + 140580 0.66 0.978388
Target:  5'- uCGUCGGCcgACCGcCGcGACcC-CCAGCCg -3'
miRNA:   3'- -GUAGCCG--UGGUaGC-CUGaGcGGUUGG- -5'
29731 3' -55.2 NC_006273.1 + 164550 0.66 0.978388
Target:  5'- --gCGGCgGCgGUCGGcC-CGCCAGCg -3'
miRNA:   3'- guaGCCG-UGgUAGCCuGaGCGGUUGg -5'
29731 3' -55.2 NC_006273.1 + 197129 0.66 0.978388
Target:  5'- --cCGGCGgCGUCGGggaccgugccGCgCGCCAugCu -3'
miRNA:   3'- guaGCCGUgGUAGCC----------UGaGCGGUugG- -5'
29731 3' -55.2 NC_006273.1 + 165455 0.66 0.978388
Target:  5'- cCAUCGcGCccgguaacauucACCAaCGGGCgcaGCCAACUu -3'
miRNA:   3'- -GUAGC-CG------------UGGUaGCCUGag-CGGUUGG- -5'
29731 3' -55.2 NC_006273.1 + 1826 0.66 0.978388
Target:  5'- uGUUGGCgcGCCAacgcgaCGGcCUCGCUGACUg -3'
miRNA:   3'- gUAGCCG--UGGUa-----GCCuGAGCGGUUGG- -5'
29731 3' -55.2 NC_006273.1 + 153504 0.66 0.978388
Target:  5'- --cCGGUACCA-CGGugaUCGCCGcgcagaACCu -3'
miRNA:   3'- guaGCCGUGGUaGCCug-AGCGGU------UGG- -5'
29731 3' -55.2 NC_006273.1 + 64101 0.66 0.97748
Target:  5'- --aUGGCGCCGUCGuuaccgcggugcaACgcgCGCUAGCCg -3'
miRNA:   3'- guaGCCGUGGUAGCc------------UGa--GCGGUUGG- -5'
29731 3' -55.2 NC_006273.1 + 87854 0.66 0.977015
Target:  5'- uCAUCGGCGcgcccCCAUcgccucccgagcgagCGGGC-CGCCGcuaucGCCa -3'
miRNA:   3'- -GUAGCCGU-----GGUA---------------GCCUGaGCGGU-----UGG- -5'
29731 3' -55.2 NC_006273.1 + 193995 0.66 0.976065
Target:  5'- --aCGGCGCCGUUgcccggGGAUaugaacccCGCCAACUg -3'
miRNA:   3'- guaGCCGUGGUAG------CCUGa-------GCGGUUGG- -5'
29731 3' -55.2 NC_006273.1 + 55344 0.66 0.976065
Target:  5'- gAUCGuucgcgaagaGCaagACUAUCGGGCUCuGCUGGCCu -3'
miRNA:   3'- gUAGC----------CG---UGGUAGCCUGAG-CGGUUGG- -5'
29731 3' -55.2 NC_006273.1 + 163160 0.66 0.976065
Target:  5'- --gCGaGCGCCAUCuGGaugcgcGCUCGCUgguGGCCg -3'
miRNA:   3'- guaGC-CGUGGUAG-CC------UGAGCGG---UUGG- -5'
29731 3' -55.2 NC_006273.1 + 70832 0.66 0.976065
Target:  5'- -uUCGGCACgCuggCGGGCcgacCGCCGcGCCc -3'
miRNA:   3'- guAGCCGUG-Gua-GCCUGa---GCGGU-UGG- -5'
29731 3' -55.2 NC_006273.1 + 83239 0.66 0.976065
Target:  5'- gCAUCGGCAUCga-GGACagCGUCGAguCCu -3'
miRNA:   3'- -GUAGCCGUGGuagCCUGa-GCGGUU--GG- -5'
29731 3' -55.2 NC_006273.1 + 184654 0.66 0.976065
Target:  5'- gCGUCGGCgACCAgaucUGGuCUC-CCAGCg -3'
miRNA:   3'- -GUAGCCG-UGGUa---GCCuGAGcGGUUGg -5'
29731 3' -55.2 NC_006273.1 + 47185 0.66 0.976065
Target:  5'- cCGUCGGCACCAcgagCGGcagagaagcagACg-GCgAGCCa -3'
miRNA:   3'- -GUAGCCGUGGUa---GCC-----------UGagCGgUUGG- -5'
29731 3' -55.2 NC_006273.1 + 139372 0.66 0.973563
Target:  5'- --aUGGCGCCGcUCGGccagACUCGUCGAg- -3'
miRNA:   3'- guaGCCGUGGU-AGCC----UGAGCGGUUgg -5'
29731 3' -55.2 NC_006273.1 + 180284 0.66 0.973563
Target:  5'- gCcgCGGaCGCCGUCGGuAC-CGUCuccACCa -3'
miRNA:   3'- -GuaGCC-GUGGUAGCC-UGaGCGGu--UGG- -5'
29731 3' -55.2 NC_006273.1 + 119802 0.66 0.973563
Target:  5'- --gCGGCGCCAguUCGGcguuacggucAgUCGCaCGGCCc -3'
miRNA:   3'- guaGCCGUGGU--AGCC----------UgAGCG-GUUGG- -5'
29731 3' -55.2 NC_006273.1 + 189877 0.66 0.973563
Target:  5'- gCGUCgGGCggACCGcCGGGCaUCGCCGucgGCUg -3'
miRNA:   3'- -GUAG-CCG--UGGUaGCCUG-AGCGGU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.