miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29732 3' -52.9 NC_006273.1 + 143688 0.66 0.995437
Target:  5'- gGUGCGUCGgcuagCGGUCUggCugGAGa -3'
miRNA:   3'- aCAUGCGGCaaaa-GCCGGA--GugCUCc -5'
29732 3' -52.9 NC_006273.1 + 143353 0.66 0.995437
Target:  5'- cUGUugGaCCGgcg-CGGUCUgGaCGAGGu -3'
miRNA:   3'- -ACAugC-GGCaaaaGCCGGAgU-GCUCC- -5'
29732 3' -52.9 NC_006273.1 + 105170 0.66 0.995437
Target:  5'- --gGCGCCG----CGGCCUCGCccAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5'
29732 3' -52.9 NC_006273.1 + 99840 0.66 0.995437
Target:  5'- aUGUugACGUCGUccagugCGGCCUCcuCGAuGGg -3'
miRNA:   3'- -ACA--UGCGGCAaaa---GCCGGAGu-GCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 204789 0.66 0.994724
Target:  5'- uUGgcgGCGCCGgugccgcCGGUCUCGCGcacgagcucgaAGGa -3'
miRNA:   3'- -ACa--UGCGGCaaaa---GCCGGAGUGC-----------UCC- -5'
29732 3' -52.9 NC_006273.1 + 190595 0.66 0.994724
Target:  5'- cGUcCGCCGgcgcccaUCGGCCgCGCGAu- -3'
miRNA:   3'- aCAuGCGGCaaa----AGCCGGaGUGCUcc -5'
29732 3' -52.9 NC_006273.1 + 196469 0.66 0.993923
Target:  5'- cGUACGCCGccUUgGGCgUCACcacguuGGa -3'
miRNA:   3'- aCAUGCGGCaaAAgCCGgAGUGcu----CC- -5'
29732 3' -52.9 NC_006273.1 + 50339 0.66 0.993923
Target:  5'- --gGCGCCGgugUUGGUCgC-CGAGGg -3'
miRNA:   3'- acaUGCGGCaaaAGCCGGaGuGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 41253 0.66 0.993923
Target:  5'- cGUGgaGUCGa---CGGCCUC-CGAGGg -3'
miRNA:   3'- aCAUg-CGGCaaaaGCCGGAGuGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 68188 0.66 0.993028
Target:  5'- --gACGCUGUUUacgcCGGCCUC-CGcGGc -3'
miRNA:   3'- acaUGCGGCAAAa---GCCGGAGuGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 79582 0.66 0.993028
Target:  5'- cGUgACGCUGUauacgUCGGCagggucCACGGGGu -3'
miRNA:   3'- aCA-UGCGGCAaa---AGCCGga----GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 133005 0.66 0.993028
Target:  5'- cGUcuaGCGCCGUUguugcagaGuGCCaCGCGAGGu -3'
miRNA:   3'- aCA---UGCGGCAAaag-----C-CGGaGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 167667 0.66 0.992031
Target:  5'- --aACGgCGgggUCGGCCgccguucgucgUCACGGGGc -3'
miRNA:   3'- acaUGCgGCaaaAGCCGG-----------AGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 200899 0.66 0.992031
Target:  5'- --aACGCCGgcgcUUUCcGCCgucuggugCACGAGGc -3'
miRNA:   3'- acaUGCGGCa---AAAGcCGGa-------GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 20504 0.67 0.990923
Target:  5'- gGUGCGCCGcag-CGGCUUUgugcCGAGa -3'
miRNA:   3'- aCAUGCGGCaaaaGCCGGAGu---GCUCc -5'
29732 3' -52.9 NC_006273.1 + 139942 0.67 0.990923
Target:  5'- --gGCGCUGg---UGGCCU-GCGAGGc -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAgUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 83012 0.67 0.990923
Target:  5'- --cACGCCGg---UGGCacaccugCACGAGGa -3'
miRNA:   3'- acaUGCGGCaaaaGCCGga-----GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 173359 0.67 0.990203
Target:  5'- gGUGcCGCCGcucugUUCGGCuauuacggucuggauCUCGCGcAGGg -3'
miRNA:   3'- aCAU-GCGGCaa---AAGCCG---------------GAGUGC-UCC- -5'
29732 3' -52.9 NC_006273.1 + 123477 0.67 0.989698
Target:  5'- gUGUAaCGCCGUgugaugcgCGGCUUUACGucGu -3'
miRNA:   3'- -ACAU-GCGGCAaaa-----GCCGGAGUGCucC- -5'
29732 3' -52.9 NC_006273.1 + 159328 0.67 0.989698
Target:  5'- -aUACGUCGUcacCGuCCUCugGAGGa -3'
miRNA:   3'- acAUGCGGCAaaaGCcGGAGugCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.