miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29732 3' -52.9 NC_006273.1 + 202216 1.11 0.007876
Target:  5'- aUGUACGCCGUUUUCGGCCUCACGAGGu -3'
miRNA:   3'- -ACAUGCGGCAAAAGCCGGAGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 117414 0.77 0.639195
Target:  5'- cGUGCccgGCCGUgcUCGGCCUCGCcuGGGa -3'
miRNA:   3'- aCAUG---CGGCAaaAGCCGGAGUGc-UCC- -5'
29732 3' -52.9 NC_006273.1 + 161828 0.75 0.756969
Target:  5'- gGUcCGCgCG---UCGGCCUCugGAGGa -3'
miRNA:   3'- aCAuGCG-GCaaaAGCCGGAGugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 112147 0.74 0.793568
Target:  5'- cGU-CGCCGUcuucUUCGaGCCgCACGAGGa -3'
miRNA:   3'- aCAuGCGGCAa---AAGC-CGGaGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 162143 0.74 0.819575
Target:  5'- -cUGCGCCGUcucUUCGcGCCccucugcguUCACGAGGa -3'
miRNA:   3'- acAUGCGGCAa--AAGC-CGG---------AGUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 125338 0.73 0.852695
Target:  5'- cGU-CGCCGUccuccucaccggaCGGCCUCACGAGu -3'
miRNA:   3'- aCAuGCGGCAaaa----------GCCGGAGUGCUCc -5'
29732 3' -52.9 NC_006273.1 + 163844 0.72 0.888013
Target:  5'- aGU-CGCCGgcagCGGCCgccgGCGAGGg -3'
miRNA:   3'- aCAuGCGGCaaaaGCCGGag--UGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 18614 0.72 0.90096
Target:  5'- gGUACGUCG---UCGGCCUCGUGGGc -3'
miRNA:   3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5'
29732 3' -52.9 NC_006273.1 + 139887 0.72 0.90096
Target:  5'- cGgcCGCCGaUUUcUCGGUCUC-CGAGGc -3'
miRNA:   3'- aCauGCGGC-AAA-AGCCGGAGuGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 204638 0.71 0.913012
Target:  5'- --gGCGCCGUUcUCGGgCa-GCGAGGg -3'
miRNA:   3'- acaUGCGGCAAaAGCCgGagUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 89586 0.71 0.918696
Target:  5'- gGgcCGUCGUgggUGGCCUCGCGGuGGc -3'
miRNA:   3'- aCauGCGGCAaaaGCCGGAGUGCU-CC- -5'
29732 3' -52.9 NC_006273.1 + 68546 0.7 0.934371
Target:  5'- gGUGCGCUGgaugcUGGCUuuUCugGAGGa -3'
miRNA:   3'- aCAUGCGGCaaaa-GCCGG--AGugCUCC- -5'
29732 3' -52.9 NC_006273.1 + 175605 0.7 0.939137
Target:  5'- gGUGCGCCGUUUugugCuGCgUCACaugGAGGa -3'
miRNA:   3'- aCAUGCGGCAAAa---GcCGgAGUG---CUCC- -5'
29732 3' -52.9 NC_006273.1 + 76533 0.7 0.939137
Target:  5'- cGU-CGCCGc--UCGGCgCggcgCACGAGGa -3'
miRNA:   3'- aCAuGCGGCaaaAGCCG-Ga---GUGCUCC- -5'
29732 3' -52.9 NC_006273.1 + 227085 0.7 0.947984
Target:  5'- gGUGCGCCGcgUcUUGGCCUgCAUGAu- -3'
miRNA:   3'- aCAUGCGGCa-AaAGCCGGA-GUGCUcc -5'
29732 3' -52.9 NC_006273.1 + 33134 0.7 0.95207
Target:  5'- --cGCGCCGccg-CGGCUUCAUGuGGc -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGCuCC- -5'
29732 3' -52.9 NC_006273.1 + 76094 0.7 0.95207
Target:  5'- aUGUGgGCCGgcacCGGCgUCAUGAGc -3'
miRNA:   3'- -ACAUgCGGCaaaaGCCGgAGUGCUCc -5'
29732 3' -52.9 NC_006273.1 + 35407 0.7 0.95207
Target:  5'- uUGUugGCCucg-UCGGCCUCggccacguuccACGAGc -3'
miRNA:   3'- -ACAugCGGcaaaAGCCGGAG-----------UGCUCc -5'
29732 3' -52.9 NC_006273.1 + 133206 0.69 0.966242
Target:  5'- --gACGCCG----CGGUCUCACcGAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUG-CUCC- -5'
29732 3' -52.9 NC_006273.1 + 117455 0.69 0.966554
Target:  5'- cGU-CGCCGgcUgugucgucucuagcgUGGCCUCACGAcGGa -3'
miRNA:   3'- aCAuGCGGCaaAa--------------GCCGGAGUGCU-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.